Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
VPS53Q5VIR6 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
VPS53Q5VIR6 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
VPS53Q5VIR6 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
VPS53Q5VIR6 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
VPS53Q5VIR6 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
VPS53Q5VIR6 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC21.62■■□□□ 1.05
VPS53Q5VIR6 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC21.62■■□□□ 1.05
VPS53Q5VIR6 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
VPS53Q5VIR6 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC21.62■■□□□ 1.05
VPS53Q5VIR6 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
VPS53Q5VIR6 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
VPS53Q5VIR6 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
VPS53Q5VIR6 BAALC-202ENST00000306391 243 ntTSL 5 BASIC21.62■■□□□ 1.05
VPS53Q5VIR6 BAALC-204ENST00000330955 222 ntTSL 5 BASIC21.62■■□□□ 1.05
VPS53Q5VIR6 AP002383.4-201ENST00000442518 975 ntBASIC21.62■■□□□ 1.05
VPS53Q5VIR6 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
VPS53Q5VIR6 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC21.62■■□□□ 1.05
VPS53Q5VIR6 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC21.62■■□□□ 1.05
VPS53Q5VIR6 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
VPS53Q5VIR6 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC21.62■■□□□ 1.05
VPS53Q5VIR6 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
VPS53Q5VIR6 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC21.62■■□□□ 1.05
VPS53Q5VIR6 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
VPS53Q5VIR6 VPS72-207ENST00000640458 689 ntTSL 5 BASIC21.62■■□□□ 1.05
VPS53Q5VIR6 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC21.62■■□□□ 1.05
VPS53Q5VIR6 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC21.62■■□□□ 1.05
VPS53Q5VIR6 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
VPS53Q5VIR6 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
VPS53Q5VIR6 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
VPS53Q5VIR6 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
VPS53Q5VIR6 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
VPS53Q5VIR6 AC134043.2-201ENST00000624206 2238 ntBASIC21.61■■□□□ 1.05
VPS53Q5VIR6 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
VPS53Q5VIR6 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC21.61■■□□□ 1.05
VPS53Q5VIR6 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
VPS53Q5VIR6 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
VPS53Q5VIR6 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC21.61■■□□□ 1.05
VPS53Q5VIR6 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
VPS53Q5VIR6 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
VPS53Q5VIR6 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
VPS53Q5VIR6 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC21.61■■□□□ 1.05
VPS53Q5VIR6 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC21.61■■□□□ 1.05
VPS53Q5VIR6 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
VPS53Q5VIR6 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC21.61■■□□□ 1.05
VPS53Q5VIR6 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC21.61■■□□□ 1.05
VPS53Q5VIR6 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC21.61■■□□□ 1.05
VPS53Q5VIR6 AC008687.5-201ENST00000593746 558 ntBASIC21.61■■□□□ 1.05
VPS53Q5VIR6 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
VPS53Q5VIR6 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC21.61■■□□□ 1.05
VPS53Q5VIR6 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
VPS53Q5VIR6 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC21.61■■□□□ 1.05
VPS53Q5VIR6 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
VPS53Q5VIR6 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
VPS53Q5VIR6 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC21.61■■□□□ 1.05
VPS53Q5VIR6 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
VPS53Q5VIR6 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
VPS53Q5VIR6 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
VPS53Q5VIR6 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
VPS53Q5VIR6 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
VPS53Q5VIR6 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC21.61■■□□□ 1.05
VPS53Q5VIR6 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
VPS53Q5VIR6 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
VPS53Q5VIR6 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
VPS53Q5VIR6 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC21.61■■□□□ 1.05
VPS53Q5VIR6 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
VPS53Q5VIR6 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
VPS53Q5VIR6 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
VPS53Q5VIR6 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
VPS53Q5VIR6 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
VPS53Q5VIR6 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC21.6■■□□□ 1.05
VPS53Q5VIR6 AC100803.2-201ENST00000562459 1963 ntBASIC21.6■■□□□ 1.05
VPS53Q5VIR6 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
VPS53Q5VIR6 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
VPS53Q5VIR6 AL845331.1-201ENST00000424978 1190 ntBASIC21.6■■□□□ 1.05
VPS53Q5VIR6 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC21.6■■□□□ 1.05
VPS53Q5VIR6 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC21.6■■□□□ 1.05
VPS53Q5VIR6 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC21.6■■□□□ 1.05
VPS53Q5VIR6 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC21.6■■□□□ 1.05
VPS53Q5VIR6 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
VPS53Q5VIR6 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC21.6■■□□□ 1.05
VPS53Q5VIR6 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
VPS53Q5VIR6 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
VPS53Q5VIR6 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC21.6■■□□□ 1.05
VPS53Q5VIR6 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
VPS53Q5VIR6 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
VPS53Q5VIR6 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
VPS53Q5VIR6 HLA-DQB1-201ENST00000374943 1656 ntBASIC21.6■■□□□ 1.05
VPS53Q5VIR6 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
VPS53Q5VIR6 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC21.59■■□□□ 1.05
VPS53Q5VIR6 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC21.59■■□□□ 1.05
VPS53Q5VIR6 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
VPS53Q5VIR6 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
VPS53Q5VIR6 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC21.59■■□□□ 1.05
VPS53Q5VIR6 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
VPS53Q5VIR6 GNAS-203ENST00000306120 1878 ntBASIC21.59■■□□□ 1.05
VPS53Q5VIR6 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC21.59■■□□□ 1.05
VPS53Q5VIR6 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
VPS53Q5VIR6 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
VPS53Q5VIR6 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms