Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCNA1P78396 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
CCNA1P78396 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CCNA1P78396 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCNA1P78396 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC20.29■□□□□ 0.84
CCNA1P78396 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
CCNA1P78396 CRYGEP-201ENST00000412192 528 ntBASIC20.29■□□□□ 0.84
CCNA1P78396 MCCD1P2-201ENST00000423228 335 ntBASIC20.29■□□□□ 0.84
CCNA1P78396 DNAJB3-202ENST00000449667 1266 ntBASIC20.29■□□□□ 0.84
CCNA1P78396 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC20.29■□□□□ 0.84
CCNA1P78396 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC20.29■□□□□ 0.84
CCNA1P78396 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC20.29■□□□□ 0.84
CCNA1P78396 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC20.29■□□□□ 0.84
CCNA1P78396 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC20.29■□□□□ 0.84
CCNA1P78396 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
CCNA1P78396 AL355385.1-201ENST00000606123 409 ntBASIC20.29■□□□□ 0.84
CCNA1P78396 AC004706.3-202ENST00000621574 984 ntBASIC20.29■□□□□ 0.84
CCNA1P78396 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC20.29■□□□□ 0.84
CCNA1P78396 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCNA1P78396 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCNA1P78396 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CCNA1P78396 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCNA1P78396 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CCNA1P78396 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC20.29■□□□□ 0.84
CCNA1P78396 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CCNA1P78396 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CCNA1P78396 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
CCNA1P78396 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC20.29■□□□□ 0.84
CCNA1P78396 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
CCNA1P78396 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
CCNA1P78396 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCNA1P78396 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCNA1P78396 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCNA1P78396 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CCNA1P78396 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC20.28■□□□□ 0.84
CCNA1P78396 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC20.28■□□□□ 0.84
CCNA1P78396 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC20.28■□□□□ 0.84
CCNA1P78396 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC20.28■□□□□ 0.84
CCNA1P78396 AC002310.6-201ENST00000624451 1377 ntBASIC20.28■□□□□ 0.84
CCNA1P78396 AL353593.2-201ENST00000602529 1483 ntBASIC20.28■□□□□ 0.84
CCNA1P78396 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC20.28■□□□□ 0.84
CCNA1P78396 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC20.28■□□□□ 0.84
CCNA1P78396 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CCNA1P78396 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCNA1P78396 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
CCNA1P78396 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC20.28■□□□□ 0.84
CCNA1P78396 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCNA1P78396 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCNA1P78396 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCNA1P78396 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CCNA1P78396 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CCNA1P78396 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
CCNA1P78396 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
CCNA1P78396 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCNA1P78396 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCNA1P78396 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCNA1P78396 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CCNA1P78396 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCNA1P78396 HMGN1P19-201ENST00000436976 333 ntBASIC20.27■□□□□ 0.84
CCNA1P78396 AP006288.1-201ENST00000446065 395 ntBASIC20.27■□□□□ 0.84
CCNA1P78396 ARTN-206ENST00000472435 402 ntTSL 3 BASIC20.27■□□□□ 0.84
CCNA1P78396 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC20.27■□□□□ 0.84
CCNA1P78396 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC20.27■□□□□ 0.84
CCNA1P78396 COX5A-206ENST00000568783 571 ntTSL 3 BASIC20.27■□□□□ 0.84
CCNA1P78396 AC005829.1-201ENST00000570002 483 ntBASIC20.27■□□□□ 0.84
CCNA1P78396 AC027796.2-201ENST00000575326 344 ntBASIC20.27■□□□□ 0.84
CCNA1P78396 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
CCNA1P78396 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC20.27■□□□□ 0.84
CCNA1P78396 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCNA1P78396 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CCNA1P78396 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC20.27■□□□□ 0.84
CCNA1P78396 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CCNA1P78396 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC20.27■□□□□ 0.83
CCNA1P78396 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC20.27■□□□□ 0.83
CCNA1P78396 NCF1C-201ENST00000438382 1427 ntBASIC20.27■□□□□ 0.83
CCNA1P78396 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
CCNA1P78396 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCNA1P78396 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCNA1P78396 PHGDH-209ENST00000641074 1780 ntBASIC20.26■□□□□ 0.83
CCNA1P78396 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CCNA1P78396 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
CCNA1P78396 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CCNA1P78396 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCNA1P78396 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCNA1P78396 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCNA1P78396 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCNA1P78396 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCNA1P78396 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
CCNA1P78396 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC20.26■□□□□ 0.83
CCNA1P78396 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC20.26■□□□□ 0.83
CCNA1P78396 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCNA1P78396 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC20.26■□□□□ 0.83
CCNA1P78396 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC20.26■□□□□ 0.83
CCNA1P78396 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
CCNA1P78396 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCNA1P78396 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCNA1P78396 ADM-208ENST00000534464 1640 ntTSL 2 BASIC20.26■□□□□ 0.83
CCNA1P78396 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCNA1P78396 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CCNA1P78396 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms