Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC17.64■□□□□ 0.41
SRP54P61011 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC17.64■□□□□ 0.41
SRP54P61011 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SRP54P61011 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC17.64■□□□□ 0.41
SRP54P61011 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SRP54P61011 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SRP54P61011 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SRP54P61011 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SRP54P61011 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SRP54P61011 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
SRP54P61011 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SRP54P61011 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC17.64■□□□□ 0.41
SRP54P61011 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC17.64■□□□□ 0.41
SRP54P61011 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC17.64■□□□□ 0.41
SRP54P61011 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SRP54P61011 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC17.64■□□□□ 0.41
SRP54P61011 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC17.64■□□□□ 0.41
SRP54P61011 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC17.64■□□□□ 0.41
SRP54P61011 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC17.64■□□□□ 0.41
SRP54P61011 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC17.64■□□□□ 0.41
SRP54P61011 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC17.64■□□□□ 0.41
SRP54P61011 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
SRP54P61011 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC17.64■□□□□ 0.41
SRP54P61011 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SRP54P61011 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SRP54P61011 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC17.64■□□□□ 0.41
SRP54P61011 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
SRP54P61011 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SRP54P61011 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
SRP54P61011 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SRP54P61011 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SRP54P61011 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SRP54P61011 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC17.64■□□□□ 0.41
SRP54P61011 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.41
SRP54P61011 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC17.64■□□□□ 0.41
SRP54P61011 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC17.64■□□□□ 0.41
SRP54P61011 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC17.64■□□□□ 0.41
SRP54P61011 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SRP54P61011 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC17.64■□□□□ 0.41
SRP54P61011 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SRP54P61011 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SRP54P61011 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SRP54P61011 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC17.63■□□□□ 0.41
SRP54P61011 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SRP54P61011 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC17.63■□□□□ 0.41
SRP54P61011 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC17.63■□□□□ 0.41
SRP54P61011 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
SRP54P61011 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC17.63■□□□□ 0.41
SRP54P61011 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
SRP54P61011 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SRP54P61011 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SRP54P61011 INTS4P1-201ENST00000438455 1935 ntBASIC17.63■□□□□ 0.41
SRP54P61011 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SRP54P61011 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
SRP54P61011 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC17.63■□□□□ 0.41
SRP54P61011 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SRP54P61011 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC17.63■□□□□ 0.41
SRP54P61011 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SRP54P61011 AC106795.1-205ENST00000512851 1056 ntBASIC17.63■□□□□ 0.41
SRP54P61011 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC17.63■□□□□ 0.41
SRP54P61011 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SRP54P61011 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC17.63■□□□□ 0.41
SRP54P61011 SLC25A6P4-201ENST00000586535 553 ntBASIC17.63■□□□□ 0.41
SRP54P61011 GZMM-202ENST00000592501 941 ntTSL 3 BASIC17.63■□□□□ 0.41
SRP54P61011 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC17.63■□□□□ 0.41
SRP54P61011 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC17.63■□□□□ 0.41
SRP54P61011 WAC-202ENST00000347934 2839 ntTSL 5 BASIC17.63■□□□□ 0.41
SRP54P61011 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC17.63■□□□□ 0.41
SRP54P61011 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
SRP54P61011 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC17.63■□□□□ 0.41
SRP54P61011 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
SRP54P61011 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC17.63■□□□□ 0.41
SRP54P61011 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC17.63■□□□□ 0.41
SRP54P61011 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
SRP54P61011 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC17.63■□□□□ 0.41
SRP54P61011 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
SRP54P61011 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
SRP54P61011 AC093010.1-201ENST00000473625 1624 ntBASIC17.62■□□□□ 0.41
SRP54P61011 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
SRP54P61011 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
SRP54P61011 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
SRP54P61011 WIZP1-201ENST00000531444 2299 ntBASIC17.62■□□□□ 0.41
SRP54P61011 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SRP54P61011 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
SRP54P61011 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC17.62■□□□□ 0.41
SRP54P61011 MRPL3P1-201ENST00000400109 1033 ntBASIC17.62■□□□□ 0.41
SRP54P61011 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC17.62■□□□□ 0.41
SRP54P61011 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SRP54P61011 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC17.62■□□□□ 0.41
SRP54P61011 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SRP54P61011 IRF8-202ENST00000562492 946 ntTSL 3 BASIC17.62■□□□□ 0.41
SRP54P61011 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC17.62■□□□□ 0.41
SRP54P61011 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC17.62■□□□□ 0.41
SRP54P61011 AC008608.2-201ENST00000606089 416 ntBASIC17.62■□□□□ 0.41
SRP54P61011 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SRP54P61011 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC17.62■□□□□ 0.41
SRP54P61011 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC17.62■□□□□ 0.41
SRP54P61011 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC17.62■□□□□ 0.41
SRP54P61011 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
SRP54P61011 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms