Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC13.48□□□□□ -0.25
FOXA3P55318 AL596257.1-201ENST00000641463 2694 ntBASIC13.48□□□□□ -0.25
FOXA3P55318 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
FOXA3P55318 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
FOXA3P55318 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
FOXA3P55318 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
FOXA3P55318 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
FOXA3P55318 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
FOXA3P55318 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
FOXA3P55318 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
FOXA3P55318 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC13.48□□□□□ -0.25
FOXA3P55318 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC13.48□□□□□ -0.25
FOXA3P55318 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC13.48□□□□□ -0.25
FOXA3P55318 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
FOXA3P55318 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
FOXA3P55318 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC13.48□□□□□ -0.25
FOXA3P55318 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
FOXA3P55318 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
FOXA3P55318 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC13.48□□□□□ -0.25
FOXA3P55318 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC13.48□□□□□ -0.25
FOXA3P55318 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
FOXA3P55318 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC13.48□□□□□ -0.25
FOXA3P55318 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC13.47□□□□□ -0.25
FOXA3P55318 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA3P55318 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC13.47□□□□□ -0.25
FOXA3P55318 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
FOXA3P55318 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA3P55318 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
FOXA3P55318 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC13.47□□□□□ -0.25
FOXA3P55318 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC13.47□□□□□ -0.25
FOXA3P55318 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA3P55318 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
FOXA3P55318 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA3P55318 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA3P55318 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC13.47□□□□□ -0.25
FOXA3P55318 FUK-207ENST00000571514 3054 ntTSL 2 BASIC13.47□□□□□ -0.25
FOXA3P55318 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA3P55318 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA3P55318 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA3P55318 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
FOXA3P55318 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA3P55318 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA3P55318 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC13.47□□□□□ -0.25
FOXA3P55318 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA3P55318 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
FOXA3P55318 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC13.47□□□□□ -0.25
FOXA3P55318 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC13.47□□□□□ -0.25
FOXA3P55318 AC091874.3-201ENST00000512672 1195 ntBASIC13.47□□□□□ -0.25
FOXA3P55318 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC13.47□□□□□ -0.25
FOXA3P55318 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA3P55318 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA3P55318 AL050303.2-201ENST00000619798 666 ntBASIC13.47□□□□□ -0.25
FOXA3P55318 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA3P55318 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA3P55318 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA3P55318 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA3P55318 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
FOXA3P55318 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC13.47□□□□□ -0.25
FOXA3P55318 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA3P55318 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC13.47□□□□□ -0.25
FOXA3P55318 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC13.47□□□□□ -0.25
FOXA3P55318 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA3P55318 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA3P55318 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
FOXA3P55318 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
FOXA3P55318 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
FOXA3P55318 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC13.47□□□□□ -0.25
FOXA3P55318 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC13.47□□□□□ -0.25
FOXA3P55318 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
FOXA3P55318 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
FOXA3P55318 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
FOXA3P55318 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
FOXA3P55318 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
FOXA3P55318 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
FOXA3P55318 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC13.46□□□□□ -0.25
FOXA3P55318 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
FOXA3P55318 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
FOXA3P55318 CROCCP2-202ENST00000412962 2773 ntBASIC13.46□□□□□ -0.25
FOXA3P55318 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC13.46□□□□□ -0.25
FOXA3P55318 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC13.46□□□□□ -0.25
FOXA3P55318 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC13.46□□□□□ -0.25
FOXA3P55318 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
FOXA3P55318 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
FOXA3P55318 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
FOXA3P55318 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC13.46□□□□□ -0.25
FOXA3P55318 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
FOXA3P55318 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
FOXA3P55318 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
FOXA3P55318 MIR564-202ENST00000385049 94 ntBASIC13.46□□□□□ -0.25
FOXA3P55318 MIPEPP3-201ENST00000412105 444 ntBASIC13.46□□□□□ -0.25
FOXA3P55318 PTPA-216ENST00000432651 857 ntTSL 2 BASIC13.46□□□□□ -0.25
FOXA3P55318 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
FOXA3P55318 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC13.46□□□□□ -0.25
FOXA3P55318 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC13.46□□□□□ -0.25
FOXA3P55318 AC092118.2-201ENST00000613495 667 ntBASIC13.46□□□□□ -0.25
FOXA3P55318 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
FOXA3P55318 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
FOXA3P55318 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
FOXA3P55318 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
FOXA3P55318 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms