Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HMGCS2P54868 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
HMGCS2P54868 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HMGCS2P54868 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HMGCS2P54868 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HMGCS2P54868 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HMGCS2P54868 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
HMGCS2P54868 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
HMGCS2P54868 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
HMGCS2P54868 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC20.58■□□□□ 0.89
HMGCS2P54868 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
HMGCS2P54868 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
HMGCS2P54868 AC022898.2-201ENST00000616822 1312 ntBASIC20.58■□□□□ 0.89
HMGCS2P54868 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
HMGCS2P54868 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
HMGCS2P54868 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
HMGCS2P54868 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
HMGCS2P54868 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
HMGCS2P54868 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
HMGCS2P54868 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
HMGCS2P54868 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
HMGCS2P54868 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
HMGCS2P54868 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
HMGCS2P54868 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC20.58■□□□□ 0.89
HMGCS2P54868 AL020989.1-201ENST00000422979 469 ntBASIC20.58■□□□□ 0.89
HMGCS2P54868 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC20.58■□□□□ 0.89
HMGCS2P54868 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC20.58■□□□□ 0.89
HMGCS2P54868 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
HMGCS2P54868 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC20.58■□□□□ 0.89
HMGCS2P54868 CYB561-217ENST00000582997 877 ntTSL 5 BASIC20.58■□□□□ 0.89
HMGCS2P54868 AL589182.2-201ENST00000619332 1049 ntBASIC20.58■□□□□ 0.89
HMGCS2P54868 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC20.58■□□□□ 0.89
HMGCS2P54868 AC079781.4-201ENST00000641908 219 ntBASIC20.58■□□□□ 0.89
HMGCS2P54868 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
HMGCS2P54868 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
HMGCS2P54868 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
HMGCS2P54868 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
HMGCS2P54868 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
HMGCS2P54868 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
HMGCS2P54868 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
HMGCS2P54868 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
HMGCS2P54868 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HMGCS2P54868 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
HMGCS2P54868 AC148477.5-201ENST00000625164 1645 ntBASIC20.57■□□□□ 0.88
HMGCS2P54868 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HMGCS2P54868 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC20.57■□□□□ 0.88
HMGCS2P54868 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
HMGCS2P54868 COA5-202ENST00000409997 557 ntTSL 4 BASIC20.57■□□□□ 0.88
HMGCS2P54868 ELK2BP-201ENST00000415014 1224 ntBASIC20.57■□□□□ 0.88
HMGCS2P54868 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
HMGCS2P54868 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC20.57■□□□□ 0.88
HMGCS2P54868 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC20.57■□□□□ 0.88
HMGCS2P54868 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
HMGCS2P54868 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC20.57■□□□□ 0.88
HMGCS2P54868 MTDHP5-201ENST00000598980 586 ntBASIC20.57■□□□□ 0.88
HMGCS2P54868 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC20.57■□□□□ 0.88
HMGCS2P54868 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC20.57■□□□□ 0.88
HMGCS2P54868 AC132938.5-201ENST00000624980 1813 ntBASIC20.57■□□□□ 0.88
HMGCS2P54868 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
HMGCS2P54868 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HMGCS2P54868 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HMGCS2P54868 AL353593.2-201ENST00000602529 1483 ntBASIC20.56■□□□□ 0.88
HMGCS2P54868 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HMGCS2P54868 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
HMGCS2P54868 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
HMGCS2P54868 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
HMGCS2P54868 AC006504.4-201ENST00000592118 1568 ntBASIC20.56■□□□□ 0.88
HMGCS2P54868 AL049757.1-201ENST00000616842 1596 ntBASIC20.56■□□□□ 0.88
HMGCS2P54868 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC20.56■□□□□ 0.88
HMGCS2P54868 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
HMGCS2P54868 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HMGCS2P54868 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC20.56■□□□□ 0.88
HMGCS2P54868 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC20.56■□□□□ 0.88
HMGCS2P54868 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC20.56■□□□□ 0.88
HMGCS2P54868 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
HMGCS2P54868 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC20.56■□□□□ 0.88
HMGCS2P54868 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC20.56■□□□□ 0.88
HMGCS2P54868 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC20.56■□□□□ 0.88
HMGCS2P54868 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC20.56■□□□□ 0.88
HMGCS2P54868 AC004706.3-202ENST00000621574 984 ntBASIC20.56■□□□□ 0.88
HMGCS2P54868 CROCCP3-202ENST00000420820 1947 ntBASIC20.56■□□□□ 0.88
HMGCS2P54868 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
HMGCS2P54868 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC20.56■□□□□ 0.88
HMGCS2P54868 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
HMGCS2P54868 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC20.55■□□□□ 0.88
HMGCS2P54868 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
HMGCS2P54868 AC073592.3-201ENST00000625118 1834 ntBASIC20.55■□□□□ 0.88
HMGCS2P54868 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC20.55■□□□□ 0.88
HMGCS2P54868 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
HMGCS2P54868 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HMGCS2P54868 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
HMGCS2P54868 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC20.55■□□□□ 0.88
HMGCS2P54868 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
HMGCS2P54868 HNRNPA1P28-201ENST00000424481 961 ntBASIC20.55■□□□□ 0.88
HMGCS2P54868 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC20.55■□□□□ 0.88
HMGCS2P54868 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
HMGCS2P54868 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC20.55■□□□□ 0.88
HMGCS2P54868 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
HMGCS2P54868 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
HMGCS2P54868 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms