Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 FLJ13224-201ENST00000313737 1514 ntBASIC18.46■□□□□ 0.55
NEK3P51956 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
NEK3P51956 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.55
NEK3P51956 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.55
NEK3P51956 TSPY22P-201ENST00000427496 604 ntBASIC18.46■□□□□ 0.55
NEK3P51956 RNF126P1-202ENST00000569893 925 ntBASIC18.46■□□□□ 0.55
NEK3P51956 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC18.46■□□□□ 0.55
NEK3P51956 NPAP1P7-201ENST00000613027 823 ntBASIC18.46■□□□□ 0.55
NEK3P51956 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC18.46■□□□□ 0.55
NEK3P51956 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
NEK3P51956 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
NEK3P51956 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
NEK3P51956 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
NEK3P51956 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC18.46■□□□□ 0.55
NEK3P51956 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
NEK3P51956 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
NEK3P51956 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
NEK3P51956 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
NEK3P51956 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
NEK3P51956 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.54
NEK3P51956 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
NEK3P51956 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
NEK3P51956 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
NEK3P51956 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
NEK3P51956 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
NEK3P51956 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
NEK3P51956 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC18.45■□□□□ 0.54
NEK3P51956 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC18.45■□□□□ 0.54
NEK3P51956 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
NEK3P51956 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC18.45■□□□□ 0.54
NEK3P51956 CEP83-AS1-201ENST00000623122 2482 ntBASIC18.45■□□□□ 0.54
NEK3P51956 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
NEK3P51956 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
NEK3P51956 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
NEK3P51956 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
NEK3P51956 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
NEK3P51956 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
NEK3P51956 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
NEK3P51956 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
NEK3P51956 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
NEK3P51956 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
NEK3P51956 MIR149-201ENST00000384879 89 ntBASIC18.45■□□□□ 0.54
NEK3P51956 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
NEK3P51956 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC18.45■□□□□ 0.54
NEK3P51956 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC18.45■□□□□ 0.54
NEK3P51956 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC18.45■□□□□ 0.54
NEK3P51956 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
NEK3P51956 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
NEK3P51956 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC18.45■□□□□ 0.54
NEK3P51956 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
NEK3P51956 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC18.45■□□□□ 0.54
NEK3P51956 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC18.45■□□□□ 0.54
NEK3P51956 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
NEK3P51956 PRORSD1P-202ENST00000563365 2154 ntBASIC18.45■□□□□ 0.54
NEK3P51956 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
NEK3P51956 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
NEK3P51956 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC18.45■□□□□ 0.54
NEK3P51956 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
NEK3P51956 Z83836.1-201ENST00000624605 1642 ntBASIC18.45■□□□□ 0.54
NEK3P51956 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
NEK3P51956 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
NEK3P51956 AC009053.2-201ENST00000563701 2365 ntBASIC18.45■□□□□ 0.54
NEK3P51956 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
NEK3P51956 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC18.44■□□□□ 0.54
NEK3P51956 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC18.44■□□□□ 0.54
NEK3P51956 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
NEK3P51956 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC18.44■□□□□ 0.54
NEK3P51956 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
NEK3P51956 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
NEK3P51956 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
NEK3P51956 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
NEK3P51956 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
NEK3P51956 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
NEK3P51956 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC18.44■□□□□ 0.54
NEK3P51956 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
NEK3P51956 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
NEK3P51956 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC18.44■□□□□ 0.54
NEK3P51956 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC18.44■□□□□ 0.54
NEK3P51956 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC18.44■□□□□ 0.54
NEK3P51956 TEN1-204ENST00000588202 862 ntTSL 3 BASIC18.44■□□□□ 0.54
NEK3P51956 AC005332.3-201ENST00000589904 676 ntBASIC18.44■□□□□ 0.54
NEK3P51956 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC18.44■□□□□ 0.54
NEK3P51956 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
NEK3P51956 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
NEK3P51956 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
NEK3P51956 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC18.44■□□□□ 0.54
NEK3P51956 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
NEK3P51956 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
NEK3P51956 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
NEK3P51956 AC009102.3-201ENST00000623118 1491 ntBASIC18.44■□□□□ 0.54
NEK3P51956 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
NEK3P51956 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC18.44■□□□□ 0.54
NEK3P51956 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
NEK3P51956 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC18.43■□□□□ 0.54
NEK3P51956 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
NEK3P51956 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC18.43■□□□□ 0.54
NEK3P51956 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
NEK3P51956 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
NEK3P51956 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
NEK3P51956 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms