Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC18.85■□□□□ 0.61
LIG3P49916 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC18.85■□□□□ 0.61
LIG3P49916 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC18.85■□□□□ 0.61
LIG3P49916 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC18.85■□□□□ 0.61
LIG3P49916 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIG3P49916 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIG3P49916 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC18.85■□□□□ 0.61
LIG3P49916 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIG3P49916 PCDH8P1-201ENST00000428983 2773 ntBASIC18.85■□□□□ 0.61
LIG3P49916 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
LIG3P49916 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIG3P49916 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIG3P49916 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIG3P49916 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIG3P49916 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
LIG3P49916 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIG3P49916 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC18.84■□□□□ 0.61
LIG3P49916 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
LIG3P49916 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIG3P49916 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIG3P49916 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIG3P49916 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC18.84■□□□□ 0.61
LIG3P49916 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIG3P49916 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC18.84■□□□□ 0.61
LIG3P49916 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIG3P49916 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIG3P49916 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
LIG3P49916 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
LIG3P49916 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
LIG3P49916 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIG3P49916 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
LIG3P49916 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC18.84■□□□□ 0.61
LIG3P49916 AL023284.2-201ENST00000405850 579 ntBASIC18.84■□□□□ 0.61
LIG3P49916 AK4P3-201ENST00000418260 669 ntBASIC18.84■□□□□ 0.61
LIG3P49916 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
LIG3P49916 COX11P1-201ENST00000489116 835 ntBASIC18.84■□□□□ 0.61
LIG3P49916 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC18.84■□□□□ 0.61
LIG3P49916 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC18.84■□□□□ 0.61
LIG3P49916 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC18.84■□□□□ 0.61
LIG3P49916 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC18.84■□□□□ 0.61
LIG3P49916 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIG3P49916 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
LIG3P49916 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
LIG3P49916 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC18.84■□□□□ 0.61
LIG3P49916 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
LIG3P49916 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIG3P49916 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIG3P49916 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC18.84■□□□□ 0.61
LIG3P49916 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
LIG3P49916 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC18.84■□□□□ 0.61
LIG3P49916 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC18.84■□□□□ 0.61
LIG3P49916 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIG3P49916 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIG3P49916 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIG3P49916 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIG3P49916 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC18.84■□□□□ 0.61
LIG3P49916 KATNBL1P6-202ENST00000562413 1466 ntBASIC18.84■□□□□ 0.61
LIG3P49916 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIG3P49916 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIG3P49916 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
LIG3P49916 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC18.83■□□□□ 0.61
LIG3P49916 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
LIG3P49916 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
LIG3P49916 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
LIG3P49916 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
LIG3P49916 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
LIG3P49916 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
LIG3P49916 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC18.83■□□□□ 0.61
LIG3P49916 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
LIG3P49916 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
LIG3P49916 UBALD1-205ENST00000590891 2641 ntBASIC18.83■□□□□ 0.61
LIG3P49916 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LIG3P49916 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC18.83■□□□□ 0.6
LIG3P49916 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
LIG3P49916 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC18.83■□□□□ 0.6
LIG3P49916 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
LIG3P49916 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
LIG3P49916 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC18.83■□□□□ 0.6
LIG3P49916 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC18.83■□□□□ 0.6
LIG3P49916 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
LIG3P49916 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC18.83■□□□□ 0.6
LIG3P49916 CR769767.2-201ENST00000622735 460 ntBASIC18.83■□□□□ 0.6
LIG3P49916 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LIG3P49916 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
LIG3P49916 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
LIG3P49916 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LIG3P49916 GNE-204ENST00000539208 2190 ntTSL 2 BASIC18.83■□□□□ 0.6
LIG3P49916 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
LIG3P49916 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LIG3P49916 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC18.83■□□□□ 0.6
LIG3P49916 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
LIG3P49916 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LIG3P49916 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LIG3P49916 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIG3P49916 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LIG3P49916 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIG3P49916 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIG3P49916 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIG3P49916 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC18.82■□□□□ 0.6
LIG3P49916 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms