Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
CTCFP49711 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
CTCFP49711 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC20.66■□□□□ 0.9
CTCFP49711 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC20.66■□□□□ 0.9
CTCFP49711 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
CTCFP49711 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC20.66■□□□□ 0.9
CTCFP49711 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC20.66■□□□□ 0.9
CTCFP49711 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC20.66■□□□□ 0.9
CTCFP49711 HFE2-206ENST00000634927 506 ntTSL 4 BASIC20.66■□□□□ 0.9
CTCFP49711 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CTCFP49711 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CTCFP49711 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
CTCFP49711 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC20.66■□□□□ 0.9
CTCFP49711 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC20.66■□□□□ 0.9
CTCFP49711 AL357033.4-201ENST00000617703 1807 ntBASIC20.66■□□□□ 0.9
CTCFP49711 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC20.66■□□□□ 0.9
CTCFP49711 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CTCFP49711 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CTCFP49711 AC087289.5-201ENST00000586076 3175 ntBASIC20.66■□□□□ 0.9
CTCFP49711 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CTCFP49711 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CTCFP49711 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC20.65■□□□□ 0.9
CTCFP49711 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CTCFP49711 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CTCFP49711 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CTCFP49711 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CTCFP49711 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC20.65■□□□□ 0.9
CTCFP49711 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CTCFP49711 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CTCFP49711 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CTCFP49711 AL121761.2-201ENST00000598007 1648 ntBASIC20.65■□□□□ 0.9
CTCFP49711 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CTCFP49711 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC20.65■□□□□ 0.9
CTCFP49711 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC20.65■□□□□ 0.9
CTCFP49711 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC20.65■□□□□ 0.9
CTCFP49711 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC20.65■□□□□ 0.9
CTCFP49711 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CTCFP49711 DDX43P3-201ENST00000441064 443 ntBASIC20.65■□□□□ 0.9
CTCFP49711 CNN2P2-201ENST00000443536 909 ntBASIC20.65■□□□□ 0.9
CTCFP49711 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC20.65■□□□□ 0.9
CTCFP49711 CNN2P3-201ENST00000450201 906 ntBASIC20.65■□□□□ 0.9
CTCFP49711 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
CTCFP49711 IGHV3-65-201ENST00000523210 341 ntBASIC20.65■□□□□ 0.9
CTCFP49711 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC20.65■□□□□ 0.9
CTCFP49711 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
CTCFP49711 AC096734.2-201ENST00000562054 433 ntBASIC20.65■□□□□ 0.9
CTCFP49711 AL136317.3-201ENST00000618497 906 ntBASIC20.65■□□□□ 0.9
CTCFP49711 AC004790.2-201ENST00000623588 572 ntBASIC20.65■□□□□ 0.9
CTCFP49711 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC20.65■□□□□ 0.9
CTCFP49711 AC073592.4-201ENST00000623827 446 ntBASIC20.65■□□□□ 0.9
CTCFP49711 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
CTCFP49711 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC20.65■□□□□ 0.9
CTCFP49711 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CTCFP49711 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC20.65■□□□□ 0.9
CTCFP49711 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC20.65■□□□□ 0.9
CTCFP49711 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CTCFP49711 AL691432.2-201ENST00000607222 2038 ntBASIC20.65■□□□□ 0.9
CTCFP49711 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CTCFP49711 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC20.64■□□□□ 0.9
CTCFP49711 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC20.64■□□□□ 0.9
CTCFP49711 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CTCFP49711 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CTCFP49711 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC20.64■□□□□ 0.89
CTCFP49711 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC20.64■□□□□ 0.89
CTCFP49711 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC20.64■□□□□ 0.89
CTCFP49711 IGLL3P-201ENST00000412472 434 ntBASIC20.64■□□□□ 0.89
CTCFP49711 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
CTCFP49711 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC20.64■□□□□ 0.89
CTCFP49711 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CTCFP49711 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CTCFP49711 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC20.64■□□□□ 0.89
CTCFP49711 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC20.64■□□□□ 0.89
CTCFP49711 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC20.64■□□□□ 0.89
CTCFP49711 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC20.64■□□□□ 0.89
CTCFP49711 AL589182.2-201ENST00000619332 1049 ntBASIC20.64■□□□□ 0.89
CTCFP49711 REXO1L3P-201ENST00000622202 1288 ntBASIC20.64■□□□□ 0.89
CTCFP49711 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CTCFP49711 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC20.64■□□□□ 0.89
CTCFP49711 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CTCFP49711 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CTCFP49711 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC20.64■□□□□ 0.89
CTCFP49711 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CTCFP49711 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CTCFP49711 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC20.63■□□□□ 0.89
CTCFP49711 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CTCFP49711 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CTCFP49711 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CTCFP49711 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CTCFP49711 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
CTCFP49711 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CTCFP49711 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
CTCFP49711 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CTCFP49711 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
CTCFP49711 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC20.63■□□□□ 0.89
CTCFP49711 AC003669.1-201ENST00000334569 611 ntBASIC20.63■□□□□ 0.89
CTCFP49711 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CTCFP49711 VMA21-202ENST00000370361 693 ntTSL 5 BASIC20.63■□□□□ 0.89
CTCFP49711 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CTCFP49711 MIR943-201ENST00000401286 94 ntBASIC20.63■□□□□ 0.89
CTCFP49711 RAC2-204ENST00000406508 893 ntTSL 5 BASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms