Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CXCL12P48061 ADM-208ENST00000534464 1640 ntTSL 2 BASIC17.74■□□□□ 0.43
CXCL12P48061 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
CXCL12P48061 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CXCL12P48061 MRPL20P1-201ENST00000400819 433 ntBASIC17.74■□□□□ 0.43
CXCL12P48061 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC17.74■□□□□ 0.43
CXCL12P48061 TSEN15P1-201ENST00000423257 515 ntBASIC17.74■□□□□ 0.43
CXCL12P48061 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC17.74■□□□□ 0.43
CXCL12P48061 ACTG1P14-201ENST00000446382 1122 ntBASIC17.74■□□□□ 0.43
CXCL12P48061 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CXCL12P48061 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CXCL12P48061 SMN2-210ENST00000511812 867 ntTSL 2 BASIC17.74■□□□□ 0.43
CXCL12P48061 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC17.74■□□□□ 0.43
CXCL12P48061 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC17.74■□□□□ 0.43
CXCL12P48061 PDPK2P-202ENST00000562415 1191 ntBASIC17.74■□□□□ 0.43
CXCL12P48061 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC17.74■□□□□ 0.43
CXCL12P48061 AC027612.4-201ENST00000605371 583 ntBASIC17.74■□□□□ 0.43
CXCL12P48061 AC010654.1-201ENST00000615722 808 ntBASIC17.74■□□□□ 0.43
CXCL12P48061 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CXCL12P48061 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CXCL12P48061 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CXCL12P48061 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CXCL12P48061 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC17.74■□□□□ 0.43
CXCL12P48061 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC17.74■□□□□ 0.43
CXCL12P48061 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC17.74■□□□□ 0.43
CXCL12P48061 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CXCL12P48061 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
CXCL12P48061 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CXCL12P48061 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CXCL12P48061 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC17.73■□□□□ 0.43
CXCL12P48061 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CXCL12P48061 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CXCL12P48061 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CXCL12P48061 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CXCL12P48061 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CXCL12P48061 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CXCL12P48061 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
CXCL12P48061 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CXCL12P48061 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
CXCL12P48061 AL035633.1-201ENST00000406139 838 ntBASIC17.73■□□□□ 0.43
CXCL12P48061 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC17.73■□□□□ 0.43
CXCL12P48061 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC17.73■□□□□ 0.43
CXCL12P48061 S100A2-206ENST00000497140 697 ntTSL 2 BASIC17.73■□□□□ 0.43
CXCL12P48061 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC17.73■□□□□ 0.43
CXCL12P48061 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC17.73■□□□□ 0.43
CXCL12P48061 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC17.73■□□□□ 0.43
CXCL12P48061 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC17.73■□□□□ 0.43
CXCL12P48061 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC17.73■□□□□ 0.43
CXCL12P48061 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC17.73■□□□□ 0.43
CXCL12P48061 AC093028.1-201ENST00000622998 982 ntBASIC17.73■□□□□ 0.43
CXCL12P48061 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CXCL12P48061 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CXCL12P48061 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CXCL12P48061 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
CXCL12P48061 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC17.73■□□□□ 0.43
CXCL12P48061 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC17.73■□□□□ 0.43
CXCL12P48061 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CXCL12P48061 BCAR1-209ENST00000546196 1340 ntBASIC17.72■□□□□ 0.43
CXCL12P48061 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC17.72■□□□□ 0.43
CXCL12P48061 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC17.72■□□□□ 0.43
CXCL12P48061 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC17.72■□□□□ 0.43
CXCL12P48061 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC17.72■□□□□ 0.43
CXCL12P48061 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC17.72■□□□□ 0.43
CXCL12P48061 AC132938.5-201ENST00000624980 1813 ntBASIC17.72■□□□□ 0.43
CXCL12P48061 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
CXCL12P48061 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
CXCL12P48061 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC17.72■□□□□ 0.43
CXCL12P48061 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CXCL12P48061 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CXCL12P48061 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CXCL12P48061 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC17.72■□□□□ 0.43
CXCL12P48061 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
CXCL12P48061 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC17.72■□□□□ 0.43
CXCL12P48061 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CXCL12P48061 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CXCL12P48061 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CXCL12P48061 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC17.72■□□□□ 0.43
CXCL12P48061 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC17.72■□□□□ 0.43
CXCL12P48061 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
CXCL12P48061 DDT-204ENST00000404092 805 ntTSL 3 BASIC17.72■□□□□ 0.43
CXCL12P48061 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC17.72■□□□□ 0.43
CXCL12P48061 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC17.72■□□□□ 0.43
CXCL12P48061 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC17.72■□□□□ 0.43
CXCL12P48061 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
CXCL12P48061 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC17.72■□□□□ 0.43
CXCL12P48061 AP000344.2-201ENST00000512987 629 ntBASIC17.72■□□□□ 0.43
CXCL12P48061 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
CXCL12P48061 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC17.72■□□□□ 0.43
CXCL12P48061 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
CXCL12P48061 SPCS2P1-201ENST00000561636 679 ntBASIC17.72■□□□□ 0.43
CXCL12P48061 AC096734.2-201ENST00000562054 433 ntBASIC17.72■□□□□ 0.43
CXCL12P48061 AC004449.1-201ENST00000564240 433 ntBASIC17.72■□□□□ 0.43
CXCL12P48061 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC17.72■□□□□ 0.43
CXCL12P48061 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CXCL12P48061 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CXCL12P48061 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
CXCL12P48061 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CXCL12P48061 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
CXCL12P48061 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC17.72■□□□□ 0.43
CXCL12P48061 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms