Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
HNF4AP41235 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HNF4AP41235 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC17.4■□□□□ 0.38
HNF4AP41235 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
HNF4AP41235 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
HNF4AP41235 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC17.39■□□□□ 0.38
HNF4AP41235 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.38
HNF4AP41235 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.38
HNF4AP41235 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.38
HNF4AP41235 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.38
HNF4AP41235 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.38
HNF4AP41235 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HNF4AP41235 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
HNF4AP41235 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.37
HNF4AP41235 GNE-204ENST00000539208 2190 ntTSL 2 BASIC17.39■□□□□ 0.37
HNF4AP41235 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC17.39■□□□□ 0.37
HNF4AP41235 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HNF4AP41235 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
HNF4AP41235 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
HNF4AP41235 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HNF4AP41235 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HNF4AP41235 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HNF4AP41235 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC17.39■□□□□ 0.37
HNF4AP41235 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HNF4AP41235 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC17.39■□□□□ 0.37
HNF4AP41235 HLA-F-220ENST00000434407 884 ntBASIC17.39■□□□□ 0.37
HNF4AP41235 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC17.39■□□□□ 0.37
HNF4AP41235 NME3-204ENST00000563498 920 ntTSL 2 BASIC17.39■□□□□ 0.37
HNF4AP41235 TK1-205ENST00000590862 642 ntTSL 3 BASIC17.39■□□□□ 0.37
HNF4AP41235 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HNF4AP41235 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC17.39■□□□□ 0.37
HNF4AP41235 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC17.39■□□□□ 0.37
HNF4AP41235 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC17.39■□□□□ 0.37
HNF4AP41235 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HNF4AP41235 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HNF4AP41235 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
HNF4AP41235 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HNF4AP41235 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HNF4AP41235 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
HNF4AP41235 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC17.39■□□□□ 0.37
HNF4AP41235 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC17.39■□□□□ 0.37
HNF4AP41235 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC17.39■□□□□ 0.37
HNF4AP41235 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HNF4AP41235 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
HNF4AP41235 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC17.39■□□□□ 0.37
HNF4AP41235 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HNF4AP41235 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC17.39■□□□□ 0.37
HNF4AP41235 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
HNF4AP41235 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HNF4AP41235 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HNF4AP41235 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HNF4AP41235 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC17.38■□□□□ 0.37
HNF4AP41235 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
HNF4AP41235 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HNF4AP41235 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC17.38■□□□□ 0.37
HNF4AP41235 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HNF4AP41235 LINC00602-201ENST00000629776 2065 ntBASIC17.38■□□□□ 0.37
HNF4AP41235 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HNF4AP41235 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HNF4AP41235 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HNF4AP41235 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
HNF4AP41235 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
HNF4AP41235 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HNF4AP41235 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
HNF4AP41235 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HNF4AP41235 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HNF4AP41235 HBZP1-201ENST00000354915 429 ntBASIC17.38■□□□□ 0.37
HNF4AP41235 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HNF4AP41235 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HNF4AP41235 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC17.38■□□□□ 0.37
HNF4AP41235 MIR1224-201ENST00000408193 85 ntBASIC17.38■□□□□ 0.37
HNF4AP41235 SAPCD2P2-201ENST00000431719 1174 ntBASIC17.38■□□□□ 0.37
HNF4AP41235 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
HNF4AP41235 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
HNF4AP41235 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC17.38■□□□□ 0.37
HNF4AP41235 VENTXP5-201ENST00000523979 775 ntBASIC17.38■□□□□ 0.37
HNF4AP41235 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC17.38■□□□□ 0.37
HNF4AP41235 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC17.38■□□□□ 0.37
HNF4AP41235 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC17.38■□□□□ 0.37
HNF4AP41235 TEN1-204ENST00000588202 862 ntTSL 3 BASIC17.38■□□□□ 0.37
HNF4AP41235 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC17.38■□□□□ 0.37
HNF4AP41235 HYMAI.1-201ENST00000620949 238 ntBASIC17.38■□□□□ 0.37
HNF4AP41235 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
HNF4AP41235 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HNF4AP41235 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
HNF4AP41235 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HNF4AP41235 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HNF4AP41235 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
HNF4AP41235 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC17.38■□□□□ 0.37
HNF4AP41235 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HNF4AP41235 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
HNF4AP41235 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC17.38■□□□□ 0.37
HNF4AP41235 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
HNF4AP41235 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC17.37■□□□□ 0.37
HNF4AP41235 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
HNF4AP41235 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
HNF4AP41235 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HNF4AP41235 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HNF4AP41235 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HNF4AP41235 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 56.5 ms