Protein–RNA interactions for Protein: P08572

COL4A2, Collagen alpha-2(IV) chain, humanhuman

Predictions only

Length 1,712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A2P08572 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
COL4A2P08572 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL4A2P08572 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
COL4A2P08572 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC17.9■□□□□ 0.46
COL4A2P08572 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC17.9■□□□□ 0.46
COL4A2P08572 AP002414.1-201ENST00000391405 1147 ntBASIC17.9■□□□□ 0.46
COL4A2P08572 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL4A2P08572 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC17.9■□□□□ 0.46
COL4A2P08572 ACTG1P4-201ENST00000425123 1122 ntBASIC17.9■□□□□ 0.46
COL4A2P08572 DDX43P3-201ENST00000441064 443 ntBASIC17.9■□□□□ 0.46
COL4A2P08572 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
COL4A2P08572 STK19B-204ENST00000512515 211 ntBASIC17.9■□□□□ 0.46
COL4A2P08572 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC17.9■□□□□ 0.46
COL4A2P08572 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC17.9■□□□□ 0.46
COL4A2P08572 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
COL4A2P08572 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL4A2P08572 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC17.9■□□□□ 0.46
COL4A2P08572 AC068137.2-201ENST00000605408 478 ntBASIC17.9■□□□□ 0.46
COL4A2P08572 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC17.9■□□□□ 0.46
COL4A2P08572 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
COL4A2P08572 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL4A2P08572 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL4A2P08572 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC17.9■□□□□ 0.46
COL4A2P08572 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL4A2P08572 CROCCP3-202ENST00000420820 1947 ntBASIC17.9■□□□□ 0.46
COL4A2P08572 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL4A2P08572 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL4A2P08572 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL4A2P08572 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
COL4A2P08572 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC17.9■□□□□ 0.46
COL4A2P08572 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.46
COL4A2P08572 CALY-203ENST00000368558 825 ntTSL 5 BASIC17.89■□□□□ 0.46
COL4A2P08572 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.46
COL4A2P08572 CBR1-202ENST00000399191 838 ntTSL 3 BASIC17.89■□□□□ 0.46
COL4A2P08572 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC17.89■□□□□ 0.46
COL4A2P08572 STK25P1-201ENST00000585406 838 ntBASIC17.89■□□□□ 0.46
COL4A2P08572 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC17.89■□□□□ 0.46
COL4A2P08572 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC17.89■□□□□ 0.46
COL4A2P08572 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
COL4A2P08572 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL4A2P08572 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL4A2P08572 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
COL4A2P08572 PC-208ENST00000529047 1607 ntTSL 3 BASIC17.89■□□□□ 0.45
COL4A2P08572 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC17.89■□□□□ 0.45
COL4A2P08572 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC17.89■□□□□ 0.45
COL4A2P08572 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL4A2P08572 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL4A2P08572 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC17.89■□□□□ 0.45
COL4A2P08572 AL645939.2-201ENST00000427340 991 ntBASIC17.89■□□□□ 0.45
COL4A2P08572 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC17.89■□□□□ 0.45
COL4A2P08572 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC17.89■□□□□ 0.45
COL4A2P08572 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC17.89■□□□□ 0.45
COL4A2P08572 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC17.89■□□□□ 0.45
COL4A2P08572 MIR3197-201ENST00000582241 73 ntBASIC17.89■□□□□ 0.45
COL4A2P08572 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC17.89■□□□□ 0.45
COL4A2P08572 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC17.89■□□□□ 0.45
COL4A2P08572 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
COL4A2P08572 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL4A2P08572 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC17.88■□□□□ 0.45
COL4A2P08572 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC17.88■□□□□ 0.45
COL4A2P08572 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
COL4A2P08572 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
COL4A2P08572 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
COL4A2P08572 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL4A2P08572 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC17.88■□□□□ 0.45
COL4A2P08572 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL4A2P08572 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
COL4A2P08572 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
COL4A2P08572 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL4A2P08572 AL139400.1-201ENST00000366220 510 ntBASIC17.88■□□□□ 0.45
COL4A2P08572 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC17.88■□□□□ 0.45
COL4A2P08572 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL4A2P08572 AP002472.1-201ENST00000577490 586 ntBASIC17.88■□□□□ 0.45
COL4A2P08572 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC17.88■□□□□ 0.45
COL4A2P08572 AL353135.1-201ENST00000606729 504 ntBASIC17.88■□□□□ 0.45
COL4A2P08572 AC091812.2-201ENST00000619081 385 ntBASIC17.88■□□□□ 0.45
COL4A2P08572 AC004877.2-201ENST00000623941 599 ntBASIC17.88■□□□□ 0.45
COL4A2P08572 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL4A2P08572 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
COL4A2P08572 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
COL4A2P08572 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL4A2P08572 HARS-201ENST00000307633 1780 ntTSL 2 BASIC17.88■□□□□ 0.45
COL4A2P08572 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
COL4A2P08572 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
COL4A2P08572 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL4A2P08572 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC17.87■□□□□ 0.45
COL4A2P08572 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC17.87■□□□□ 0.45
COL4A2P08572 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL4A2P08572 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
COL4A2P08572 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC17.87■□□□□ 0.45
COL4A2P08572 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL4A2P08572 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL4A2P08572 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC17.87■□□□□ 0.45
COL4A2P08572 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC17.87■□□□□ 0.45
COL4A2P08572 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC17.87■□□□□ 0.45
COL4A2P08572 SNHG9-202ENST00000564014 471 ntBASIC17.87■□□□□ 0.45
COL4A2P08572 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
COL4A2P08572 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC17.87■□□□□ 0.45
COL4A2P08572 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC17.87■□□□□ 0.45
COL4A2P08572 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC17.87■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms