Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC19.36■□□□□ 0.69
RNF40O75150 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC19.36■□□□□ 0.69
RNF40O75150 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
RNF40O75150 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
RNF40O75150 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
RNF40O75150 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
RNF40O75150 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RNF40O75150 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RNF40O75150 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
RNF40O75150 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC19.35■□□□□ 0.69
RNF40O75150 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
RNF40O75150 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
RNF40O75150 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RNF40O75150 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC19.35■□□□□ 0.69
RNF40O75150 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RNF40O75150 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC19.35■□□□□ 0.69
RNF40O75150 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC19.35■□□□□ 0.69
RNF40O75150 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
RNF40O75150 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RNF40O75150 GAD2-202ENST00000376248 680 ntTSL 5 BASIC19.35■□□□□ 0.69
RNF40O75150 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
RNF40O75150 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC19.35■□□□□ 0.69
RNF40O75150 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC19.35■□□□□ 0.69
RNF40O75150 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
RNF40O75150 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
RNF40O75150 FGF14-AS2-201ENST00000606448 1074 ntBASIC19.35■□□□□ 0.69
RNF40O75150 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC19.35■□□□□ 0.69
RNF40O75150 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RNF40O75150 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RNF40O75150 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RNF40O75150 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
RNF40O75150 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RNF40O75150 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RNF40O75150 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
RNF40O75150 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RNF40O75150 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
RNF40O75150 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC19.34■□□□□ 0.69
RNF40O75150 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RNF40O75150 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RNF40O75150 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
RNF40O75150 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RNF40O75150 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RNF40O75150 AC026396.1-201ENST00000419388 421 ntBASIC19.34■□□□□ 0.69
RNF40O75150 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC19.34■□□□□ 0.69
RNF40O75150 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC19.34■□□□□ 0.69
RNF40O75150 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RNF40O75150 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC19.34■□□□□ 0.69
RNF40O75150 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
RNF40O75150 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
RNF40O75150 CR769767.2-201ENST00000622735 460 ntBASIC19.34■□□□□ 0.69
RNF40O75150 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
RNF40O75150 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC19.34■□□□□ 0.69
RNF40O75150 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
RNF40O75150 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC19.34■□□□□ 0.69
RNF40O75150 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RNF40O75150 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
RNF40O75150 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
RNF40O75150 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
RNF40O75150 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
RNF40O75150 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
RNF40O75150 OR6D1P-202ENST00000641007 5290 ntBASIC19.33■□□□□ 0.69
RNF40O75150 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
RNF40O75150 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC19.33■□□□□ 0.69
RNF40O75150 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC19.33■□□□□ 0.69
RNF40O75150 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.69
RNF40O75150 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
RNF40O75150 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC19.33■□□□□ 0.69
RNF40O75150 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
RNF40O75150 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC19.33■□□□□ 0.69
RNF40O75150 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
RNF40O75150 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
RNF40O75150 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
RNF40O75150 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
RNF40O75150 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC19.33■□□□□ 0.68
RNF40O75150 AC012313.10-201ENST00000623509 926 ntBASIC19.33■□□□□ 0.68
RNF40O75150 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
RNF40O75150 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
RNF40O75150 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
RNF40O75150 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC19.33■□□□□ 0.68
RNF40O75150 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC19.33■□□□□ 0.68
RNF40O75150 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
RNF40O75150 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RNF40O75150 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
RNF40O75150 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC19.32■□□□□ 0.68
RNF40O75150 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC19.32■□□□□ 0.68
RNF40O75150 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
RNF40O75150 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
RNF40O75150 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
RNF40O75150 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
RNF40O75150 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC19.32■□□□□ 0.68
RNF40O75150 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
RNF40O75150 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
RNF40O75150 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC19.32■□□□□ 0.68
RNF40O75150 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RNF40O75150 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
RNF40O75150 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC19.32■□□□□ 0.68
RNF40O75150 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RNF40O75150 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RNF40O75150 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
RNF40O75150 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 58.1 ms