Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC14.44□□□□□ -0.1
HMGB3O15347 NRP2-201ENST00000272849 5909 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HMGB3O15347 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC14.44□□□□□ -0.1
HMGB3O15347 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC14.44□□□□□ -0.1
HMGB3O15347 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
HMGB3O15347 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HMGB3O15347 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC14.44□□□□□ -0.1
HMGB3O15347 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
HMGB3O15347 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
HMGB3O15347 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HMGB3O15347 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HMGB3O15347 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC14.44□□□□□ -0.1
HMGB3O15347 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC14.44□□□□□ -0.1
HMGB3O15347 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HMGB3O15347 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC14.44□□□□□ -0.1
HMGB3O15347 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HMGB3O15347 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
HMGB3O15347 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HMGB3O15347 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC14.44□□□□□ -0.1
HMGB3O15347 RGMA-211ENST00000557420 989 ntTSL 3 BASIC14.44□□□□□ -0.1
HMGB3O15347 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC14.44□□□□□ -0.1
HMGB3O15347 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC14.44□□□□□ -0.1
HMGB3O15347 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC14.44□□□□□ -0.1
HMGB3O15347 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC14.44□□□□□ -0.1
HMGB3O15347 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC14.44□□□□□ -0.1
HMGB3O15347 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC14.44□□□□□ -0.1
HMGB3O15347 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
HMGB3O15347 AP001094.4-201ENST00000579008 2176 ntBASIC14.44□□□□□ -0.1
HMGB3O15347 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
HMGB3O15347 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HMGB3O15347 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HMGB3O15347 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HMGB3O15347 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HMGB3O15347 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC14.44□□□□□ -0.1
HMGB3O15347 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HMGB3O15347 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
HMGB3O15347 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC14.43□□□□□ -0.1
HMGB3O15347 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC14.43□□□□□ -0.1
HMGB3O15347 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC14.43□□□□□ -0.1
HMGB3O15347 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
HMGB3O15347 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HMGB3O15347 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HMGB3O15347 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC14.43□□□□□ -0.1
HMGB3O15347 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC14.43□□□□□ -0.1
HMGB3O15347 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
HMGB3O15347 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC14.43□□□□□ -0.1
HMGB3O15347 IKZF1-205ENST00000357364 5925 ntTSL 5 BASIC14.43□□□□□ -0.1
HMGB3O15347 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HMGB3O15347 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
HMGB3O15347 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC14.43□□□□□ -0.1
HMGB3O15347 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC14.43□□□□□ -0.1
HMGB3O15347 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HMGB3O15347 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
HMGB3O15347 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC14.43□□□□□ -0.1
HMGB3O15347 HARS-201ENST00000307633 1780 ntTSL 2 BASIC14.43□□□□□ -0.1
HMGB3O15347 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
HMGB3O15347 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HMGB3O15347 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
HMGB3O15347 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
HMGB3O15347 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC14.43□□□□□ -0.1
HMGB3O15347 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
HMGB3O15347 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC14.43□□□□□ -0.1
HMGB3O15347 DUSP5P2-201ENST00000426873 1033 ntBASIC14.43□□□□□ -0.1
HMGB3O15347 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
HMGB3O15347 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC14.43□□□□□ -0.1
HMGB3O15347 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HMGB3O15347 AC105036.2-201ENST00000569468 176 ntBASIC14.43□□□□□ -0.1
HMGB3O15347 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC14.43□□□□□ -0.1
HMGB3O15347 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC14.43□□□□□ -0.1
HMGB3O15347 MDK-213ENST00000617138 635 ntTSL 2 BASIC14.43□□□□□ -0.1
HMGB3O15347 AL365209.1-201ENST00000624418 6473 ntBASIC14.43□□□□□ -0.1
HMGB3O15347 HIC2-203ENST00000443632 6940 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HMGB3O15347 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC14.43□□□□□ -0.1
HMGB3O15347 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC14.43□□□□□ -0.1
HMGB3O15347 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC14.43□□□□□ -0.1
HMGB3O15347 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
HMGB3O15347 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
HMGB3O15347 TMEM132C-201ENST00000435159 4947 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
HMGB3O15347 LATS1-207ENST00000543571 7517 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HMGB3O15347 B3GAT1-203ENST00000524765 5737 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
HMGB3O15347 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HMGB3O15347 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
HMGB3O15347 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC14.43□□□□□ -0.1
HMGB3O15347 MYLKP1-201ENST00000509077 1580 ntBASIC14.43□□□□□ -0.1
HMGB3O15347 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HMGB3O15347 IGF2BP1-201ENST00000290341 8274 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HMGB3O15347 HLA-DQB1-201ENST00000374943 1656 ntBASIC14.42□□□□□ -0.1
HMGB3O15347 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC14.42□□□□□ -0.1
HMGB3O15347 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
HMGB3O15347 ABR-205ENST00000544583 5595 ntTSL 2 BASIC14.42□□□□□ -0.1
HMGB3O15347 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HMGB3O15347 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HMGB3O15347 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
HMGB3O15347 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
HMGB3O15347 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HMGB3O15347 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
HMGB3O15347 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC14.42□□□□□ -0.1
HMGB3O15347 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
HMGB3O15347 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
HMGB3O15347 AL023806.1-201ENST00000603994 1649 ntBASIC14.42□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms