Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC30.8■■■□□ 2.52
CCDC88BA6NC98 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC30.8■■■□□ 2.52
CCDC88BA6NC98 SIGLEC30P-201ENST00000455569 941 ntBASIC30.8■■■□□ 2.52
CCDC88BA6NC98 AC109462.3-201ENST00000573934 613 ntBASIC30.8■■■□□ 2.52
CCDC88BA6NC98 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC30.8■■■□□ 2.52
CCDC88BA6NC98 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC30.8■■■□□ 2.52
CCDC88BA6NC98 AL096828.2-201ENST00000567259 1965 ntBASIC30.8■■■□□ 2.52
CCDC88BA6NC98 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC30.8■■■□□ 2.52
CCDC88BA6NC98 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC30.79■■■□□ 2.52
CCDC88BA6NC98 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC30.79■■■□□ 2.52
CCDC88BA6NC98 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC30.79■■■□□ 2.52
CCDC88BA6NC98 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC30.79■■■□□ 2.52
CCDC88BA6NC98 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC30.79■■■□□ 2.52
CCDC88BA6NC98 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
CCDC88BA6NC98 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC30.79■■■□□ 2.52
CCDC88BA6NC98 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC30.79■■■□□ 2.52
CCDC88BA6NC98 MRPL20P1-201ENST00000400819 433 ntBASIC30.79■■■□□ 2.52
CCDC88BA6NC98 SNHG9-202ENST00000564014 471 ntBASIC30.79■■■□□ 2.52
CCDC88BA6NC98 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC30.79■■■□□ 2.52
CCDC88BA6NC98 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
CCDC88BA6NC98 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC30.79■■■□□ 2.52
CCDC88BA6NC98 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC30.79■■■□□ 2.52
CCDC88BA6NC98 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC30.79■■■□□ 2.52
CCDC88BA6NC98 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
CCDC88BA6NC98 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC30.78■■■□□ 2.52
CCDC88BA6NC98 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC30.78■■■□□ 2.52
CCDC88BA6NC98 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC30.78■■■□□ 2.52
CCDC88BA6NC98 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
CCDC88BA6NC98 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC30.78■■■□□ 2.52
CCDC88BA6NC98 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC30.78■■■□□ 2.52
CCDC88BA6NC98 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC30.78■■■□□ 2.52
CCDC88BA6NC98 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC30.78■■■□□ 2.52
CCDC88BA6NC98 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC30.78■■■□□ 2.52
CCDC88BA6NC98 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
CCDC88BA6NC98 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
CCDC88BA6NC98 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
CCDC88BA6NC98 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
CCDC88BA6NC98 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC30.78■■■□□ 2.52
CCDC88BA6NC98 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC30.78■■■□□ 2.52
CCDC88BA6NC98 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
CCDC88BA6NC98 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC30.78■■■□□ 2.52
CCDC88BA6NC98 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
CCDC88BA6NC98 AC009336.1-201ENST00000608941 1553 ntBASIC30.78■■■□□ 2.52
CCDC88BA6NC98 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC30.77■■■□□ 2.52
CCDC88BA6NC98 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC30.77■■■□□ 2.52
CCDC88BA6NC98 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC30.77■■■□□ 2.52
CCDC88BA6NC98 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC30.77■■■□□ 2.52
CCDC88BA6NC98 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC30.77■■■□□ 2.52
CCDC88BA6NC98 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC30.77■■■□□ 2.52
CCDC88BA6NC98 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
CCDC88BA6NC98 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC30.77■■■□□ 2.52
CCDC88BA6NC98 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC30.77■■■□□ 2.52
CCDC88BA6NC98 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC30.77■■■□□ 2.52
CCDC88BA6NC98 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC30.77■■■□□ 2.52
CCDC88BA6NC98 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC30.77■■■□□ 2.52
CCDC88BA6NC98 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
CCDC88BA6NC98 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC30.77■■■□□ 2.52
CCDC88BA6NC98 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC30.77■■■□□ 2.52
CCDC88BA6NC98 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC30.77■■■□□ 2.52
CCDC88BA6NC98 PC-208ENST00000529047 1607 ntTSL 3 BASIC30.76■■■□□ 2.52
CCDC88BA6NC98 STOM-202ENST00000347359 870 ntTSL 2 BASIC30.76■■■□□ 2.52
CCDC88BA6NC98 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.52
CCDC88BA6NC98 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC30.76■■■□□ 2.52
CCDC88BA6NC98 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.52
CCDC88BA6NC98 PTCHD3P3-201ENST00000403073 906 ntBASIC30.76■■■□□ 2.52
CCDC88BA6NC98 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC30.76■■■□□ 2.52
CCDC88BA6NC98 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC30.76■■■□□ 2.52
CCDC88BA6NC98 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC30.76■■■□□ 2.52
CCDC88BA6NC98 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC30.76■■■□□ 2.52
CCDC88BA6NC98 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC30.76■■■□□ 2.52
CCDC88BA6NC98 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.52
CCDC88BA6NC98 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC30.76■■■□□ 2.52
CCDC88BA6NC98 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC30.76■■■□□ 2.52
CCDC88BA6NC98 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC30.76■■■□□ 2.52
CCDC88BA6NC98 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC30.76■■■□□ 2.52
CCDC88BA6NC98 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC30.76■■■□□ 2.51
CCDC88BA6NC98 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC30.76■■■□□ 2.51
CCDC88BA6NC98 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
CCDC88BA6NC98 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC30.76■■■□□ 2.51
CCDC88BA6NC98 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC30.76■■■□□ 2.51
CCDC88BA6NC98 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC30.76■■■□□ 2.51
CCDC88BA6NC98 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
CCDC88BA6NC98 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC30.76■■■□□ 2.51
CCDC88BA6NC98 AP002414.1-201ENST00000391405 1147 ntBASIC30.76■■■□□ 2.51
CCDC88BA6NC98 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC30.76■■■□□ 2.51
CCDC88BA6NC98 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC30.76■■■□□ 2.51
CCDC88BA6NC98 RPL28-205ENST00000558131 444 ntTSL 5 BASIC30.76■■■□□ 2.51
CCDC88BA6NC98 AC004877.2-201ENST00000623941 599 ntBASIC30.76■■■□□ 2.51
CCDC88BA6NC98 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
CCDC88BA6NC98 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
CCDC88BA6NC98 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
CCDC88BA6NC98 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
CCDC88BA6NC98 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
CCDC88BA6NC98 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC30.75■■■□□ 2.51
CCDC88BA6NC98 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC30.75■■■□□ 2.51
CCDC88BA6NC98 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC30.75■■■□□ 2.51
CCDC88BA6NC98 AQP6-205ENST00000618286 829 ntTSL 5 BASIC30.75■■■□□ 2.51
CCDC88BA6NC98 ORC5-208ENST00000626700 344 ntTSL 3 BASIC30.75■■■□□ 2.51
CCDC88BA6NC98 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC30.75■■■□□ 2.51
CCDC88BA6NC98 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC30.74■■■□□ 2.51
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms