Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 ADM-208ENST00000534464 1640 ntTSL 2 BASIC19.16■□□□□ 0.66
SMIM28A0A1B0GU29 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMIM28A0A1B0GU29 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC19.16■□□□□ 0.66
SMIM28A0A1B0GU29 KRT18P67-201ENST00000432816 1264 ntBASIC19.16■□□□□ 0.66
SMIM28A0A1B0GU29 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC19.16■□□□□ 0.66
SMIM28A0A1B0GU29 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC19.16■□□□□ 0.66
SMIM28A0A1B0GU29 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SMIM28A0A1B0GU29 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC19.16■□□□□ 0.66
SMIM28A0A1B0GU29 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SMIM28A0A1B0GU29 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC19.16■□□□□ 0.66
SMIM28A0A1B0GU29 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMIM28A0A1B0GU29 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMIM28A0A1B0GU29 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC19.16■□□□□ 0.66
SMIM28A0A1B0GU29 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC19.16■□□□□ 0.66
SMIM28A0A1B0GU29 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMIM28A0A1B0GU29 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC19.16■□□□□ 0.66
SMIM28A0A1B0GU29 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMIM28A0A1B0GU29 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SMIM28A0A1B0GU29 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC19.16■□□□□ 0.66
SMIM28A0A1B0GU29 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC19.16■□□□□ 0.66
SMIM28A0A1B0GU29 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
SMIM28A0A1B0GU29 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SMIM28A0A1B0GU29 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
SMIM28A0A1B0GU29 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SMIM28A0A1B0GU29 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SMIM28A0A1B0GU29 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SMIM28A0A1B0GU29 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SMIM28A0A1B0GU29 MED22-202ENST00000371999 987 ntTSL 3 BASIC19.15■□□□□ 0.66
SMIM28A0A1B0GU29 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SMIM28A0A1B0GU29 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SMIM28A0A1B0GU29 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC19.15■□□□□ 0.66
SMIM28A0A1B0GU29 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SMIM28A0A1B0GU29 HIST2H3DP1-201ENST00000401004 416 ntBASIC19.15■□□□□ 0.66
SMIM28A0A1B0GU29 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
SMIM28A0A1B0GU29 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC19.15■□□□□ 0.66
SMIM28A0A1B0GU29 RNPS1P1-201ENST00000507437 918 ntBASIC19.15■□□□□ 0.66
SMIM28A0A1B0GU29 RNA5SP419-201ENST00000515908 135 ntBASIC19.15■□□□□ 0.66
SMIM28A0A1B0GU29 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC19.15■□□□□ 0.66
SMIM28A0A1B0GU29 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC19.15■□□□□ 0.66
SMIM28A0A1B0GU29 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC19.15■□□□□ 0.66
SMIM28A0A1B0GU29 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC19.15■□□□□ 0.66
SMIM28A0A1B0GU29 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC19.15■□□□□ 0.66
SMIM28A0A1B0GU29 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
SMIM28A0A1B0GU29 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SMIM28A0A1B0GU29 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC19.15■□□□□ 0.66
SMIM28A0A1B0GU29 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC19.15■□□□□ 0.66
SMIM28A0A1B0GU29 BICD1-207ENST00000551848 1962 ntBASIC19.15■□□□□ 0.66
SMIM28A0A1B0GU29 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC19.14■□□□□ 0.66
SMIM28A0A1B0GU29 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
SMIM28A0A1B0GU29 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
SMIM28A0A1B0GU29 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC19.14■□□□□ 0.66
SMIM28A0A1B0GU29 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC19.14■□□□□ 0.66
SMIM28A0A1B0GU29 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC19.14■□□□□ 0.65
SMIM28A0A1B0GU29 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SMIM28A0A1B0GU29 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SMIM28A0A1B0GU29 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SMIM28A0A1B0GU29 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
SMIM28A0A1B0GU29 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SMIM28A0A1B0GU29 SRP19-202ENST00000445150 833 ntTSL 2 BASIC19.14■□□□□ 0.65
SMIM28A0A1B0GU29 SCARNA2-201ENST00000458748 420 ntBASIC19.14■□□□□ 0.65
SMIM28A0A1B0GU29 AF186996.4-201ENST00000467186 377 ntBASIC19.14■□□□□ 0.65
SMIM28A0A1B0GU29 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SMIM28A0A1B0GU29 AC079776.4-201ENST00000511039 504 ntBASIC19.14■□□□□ 0.65
SMIM28A0A1B0GU29 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC19.14■□□□□ 0.65
SMIM28A0A1B0GU29 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC19.14■□□□□ 0.65
SMIM28A0A1B0GU29 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC19.14■□□□□ 0.65
SMIM28A0A1B0GU29 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC19.14■□□□□ 0.65
SMIM28A0A1B0GU29 AL773604.1-201ENST00000617417 272 ntBASIC19.14■□□□□ 0.65
SMIM28A0A1B0GU29 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
SMIM28A0A1B0GU29 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC19.14■□□□□ 0.65
SMIM28A0A1B0GU29 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SMIM28A0A1B0GU29 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SMIM28A0A1B0GU29 FLJ13224-201ENST00000313737 1514 ntBASIC19.14■□□□□ 0.65
SMIM28A0A1B0GU29 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC19.14■□□□□ 0.65
SMIM28A0A1B0GU29 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC19.14■□□□□ 0.65
SMIM28A0A1B0GU29 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SMIM28A0A1B0GU29 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
SMIM28A0A1B0GU29 AC009949.1-201ENST00000623048 1830 ntBASIC19.14■□□□□ 0.65
SMIM28A0A1B0GU29 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SMIM28A0A1B0GU29 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SMIM28A0A1B0GU29 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC19.13■□□□□ 0.65
SMIM28A0A1B0GU29 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
SMIM28A0A1B0GU29 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC19.13■□□□□ 0.65
SMIM28A0A1B0GU29 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC19.13■□□□□ 0.65
SMIM28A0A1B0GU29 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
SMIM28A0A1B0GU29 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SMIM28A0A1B0GU29 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
SMIM28A0A1B0GU29 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC19.13■□□□□ 0.65
SMIM28A0A1B0GU29 AC018712.1-201ENST00000455767 687 ntBASIC19.13■□□□□ 0.65
SMIM28A0A1B0GU29 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC19.13■□□□□ 0.65
SMIM28A0A1B0GU29 PENK-208ENST00000523051 772 ntTSL 5 BASIC19.13■□□□□ 0.65
SMIM28A0A1B0GU29 SART3-203ENST00000546611 1184 ntBASIC19.13■□□□□ 0.65
SMIM28A0A1B0GU29 AC116407.2-201ENST00000613639 860 ntBASIC19.13■□□□□ 0.65
SMIM28A0A1B0GU29 AD001527.2-201ENST00000622994 785 ntBASIC19.13■□□□□ 0.65
SMIM28A0A1B0GU29 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC19.13■□□□□ 0.65
SMIM28A0A1B0GU29 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC19.13■□□□□ 0.65
SMIM28A0A1B0GU29 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SMIM28A0A1B0GU29 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
SMIM28A0A1B0GU29 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SMIM28A0A1B0GU29 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms