Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDHGA1Q9Y5H4 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDHGA1Q9Y5H4 AC007967.3-201ENST00000434308 558 ntBASIC17.19■□□□□ 0.34
PCDHGA1Q9Y5H4 BX005266.1-201ENST00000473402 457 ntBASIC17.19■□□□□ 0.34
PCDHGA1Q9Y5H4 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
PCDHGA1Q9Y5H4 AC108751.1-201ENST00000490852 363 ntBASIC17.19■□□□□ 0.34
PCDHGA1Q9Y5H4 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC17.19■□□□□ 0.34
PCDHGA1Q9Y5H4 AC122714.2-201ENST00000502787 707 ntBASIC17.19■□□□□ 0.34
PCDHGA1Q9Y5H4 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC17.19■□□□□ 0.34
PCDHGA1Q9Y5H4 AC005829.1-201ENST00000570002 483 ntBASIC17.19■□□□□ 0.34
PCDHGA1Q9Y5H4 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC17.19■□□□□ 0.34
PCDHGA1Q9Y5H4 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC17.19■□□□□ 0.34
PCDHGA1Q9Y5H4 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDHGA1Q9Y5H4 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDHGA1Q9Y5H4 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDHGA1Q9Y5H4 SIGLEC16-201ENST00000599858 1437 ntBASIC17.19■□□□□ 0.34
PCDHGA1Q9Y5H4 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC17.19■□□□□ 0.34
PCDHGA1Q9Y5H4 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
PCDHGA1Q9Y5H4 SNAI3-AS1-205ENST00000568633 2096 ntBASIC17.19■□□□□ 0.34
PCDHGA1Q9Y5H4 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
PCDHGA1Q9Y5H4 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
PCDHGA1Q9Y5H4 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC17.19■□□□□ 0.34
PCDHGA1Q9Y5H4 KRT18P28-201ENST00000453838 1332 ntBASIC17.19■□□□□ 0.34
PCDHGA1Q9Y5H4 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
PCDHGA1Q9Y5H4 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
PCDHGA1Q9Y5H4 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDHGA1Q9Y5H4 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
PCDHGA1Q9Y5H4 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PCDHGA1Q9Y5H4 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC17.18■□□□□ 0.34
PCDHGA1Q9Y5H4 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
PCDHGA1Q9Y5H4 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PCDHGA1Q9Y5H4 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
PCDHGA1Q9Y5H4 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC17.18■□□□□ 0.34
PCDHGA1Q9Y5H4 AC002310.6-201ENST00000624451 1377 ntBASIC17.18■□□□□ 0.34
PCDHGA1Q9Y5H4 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC17.18■□□□□ 0.34
PCDHGA1Q9Y5H4 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
PCDHGA1Q9Y5H4 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC17.18■□□□□ 0.34
PCDHGA1Q9Y5H4 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
PCDHGA1Q9Y5H4 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC17.18■□□□□ 0.34
PCDHGA1Q9Y5H4 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC17.18■□□□□ 0.34
PCDHGA1Q9Y5H4 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
PCDHGA1Q9Y5H4 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PCDHGA1Q9Y5H4 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
PCDHGA1Q9Y5H4 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC17.18■□□□□ 0.34
PCDHGA1Q9Y5H4 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PCDHGA1Q9Y5H4 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
PCDHGA1Q9Y5H4 AC073621.1-201ENST00000392730 636 ntBASIC17.18■□□□□ 0.34
PCDHGA1Q9Y5H4 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC17.18■□□□□ 0.34
PCDHGA1Q9Y5H4 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC17.18■□□□□ 0.34
PCDHGA1Q9Y5H4 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC17.18■□□□□ 0.34
PCDHGA1Q9Y5H4 YBX1P5-201ENST00000509441 847 ntBASIC17.18■□□□□ 0.34
PCDHGA1Q9Y5H4 CYGB-205ENST00000590175 830 ntTSL 3 BASIC17.18■□□□□ 0.34
PCDHGA1Q9Y5H4 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC17.18■□□□□ 0.34
PCDHGA1Q9Y5H4 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC17.18■□□□□ 0.34
PCDHGA1Q9Y5H4 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PCDHGA1Q9Y5H4 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC17.18■□□□□ 0.34
PCDHGA1Q9Y5H4 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC17.18■□□□□ 0.34
PCDHGA1Q9Y5H4 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
PCDHGA1Q9Y5H4 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
PCDHGA1Q9Y5H4 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
PCDHGA1Q9Y5H4 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC17.17■□□□□ 0.34
PCDHGA1Q9Y5H4 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
PCDHGA1Q9Y5H4 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC17.17■□□□□ 0.34
PCDHGA1Q9Y5H4 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PCDHGA1Q9Y5H4 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
PCDHGA1Q9Y5H4 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
PCDHGA1Q9Y5H4 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
PCDHGA1Q9Y5H4 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
PCDHGA1Q9Y5H4 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC17.17■□□□□ 0.34
PCDHGA1Q9Y5H4 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PCDHGA1Q9Y5H4 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC17.17■□□□□ 0.34
PCDHGA1Q9Y5H4 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC17.17■□□□□ 0.34
PCDHGA1Q9Y5H4 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC17.17■□□□□ 0.34
PCDHGA1Q9Y5H4 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
PCDHGA1Q9Y5H4 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC17.17■□□□□ 0.34
PCDHGA1Q9Y5H4 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
PCDHGA1Q9Y5H4 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC17.17■□□□□ 0.34
PCDHGA1Q9Y5H4 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC17.17■□□□□ 0.34
PCDHGA1Q9Y5H4 TCAP-202ENST00000578283 583 ntTSL 5 BASIC17.17■□□□□ 0.34
PCDHGA1Q9Y5H4 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PCDHGA1Q9Y5H4 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PCDHGA1Q9Y5H4 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PCDHGA1Q9Y5H4 ADK-206ENST00000541550 2222 ntTSL 2 BASIC17.17■□□□□ 0.34
PCDHGA1Q9Y5H4 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PCDHGA1Q9Y5H4 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
PCDHGA1Q9Y5H4 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
PCDHGA1Q9Y5H4 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PCDHGA1Q9Y5H4 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC17.16■□□□□ 0.34
PCDHGA1Q9Y5H4 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PCDHGA1Q9Y5H4 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC17.16■□□□□ 0.34
PCDHGA1Q9Y5H4 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC17.16■□□□□ 0.34
PCDHGA1Q9Y5H4 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
PCDHGA1Q9Y5H4 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
PCDHGA1Q9Y5H4 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
PCDHGA1Q9Y5H4 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC17.16■□□□□ 0.34
PCDHGA1Q9Y5H4 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
PCDHGA1Q9Y5H4 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PCDHGA1Q9Y5H4 AC096633.1-201ENST00000422446 749 ntBASIC17.16■□□□□ 0.34
PCDHGA1Q9Y5H4 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC17.16■□□□□ 0.34
PCDHGA1Q9Y5H4 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 55.9 ms