Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC17.39■□□□□ 0.37
VPS4AQ9UN37 MIR3180-5-201ENST00000583743 153 ntBASIC17.39■□□□□ 0.37
VPS4AQ9UN37 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS4AQ9UN37 AC012313.1-201ENST00000593393 3059 ntBASIC17.39■□□□□ 0.37
VPS4AQ9UN37 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC17.39■□□□□ 0.37
VPS4AQ9UN37 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS4AQ9UN37 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS4AQ9UN37 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS4AQ9UN37 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS4AQ9UN37 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS4AQ9UN37 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS4AQ9UN37 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
VPS4AQ9UN37 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC17.39■□□□□ 0.37
VPS4AQ9UN37 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC17.39■□□□□ 0.37
VPS4AQ9UN37 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
VPS4AQ9UN37 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC17.39■□□□□ 0.37
VPS4AQ9UN37 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS4AQ9UN37 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC17.39■□□□□ 0.37
VPS4AQ9UN37 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS4AQ9UN37 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC17.39■□□□□ 0.37
VPS4AQ9UN37 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC17.38■□□□□ 0.37
VPS4AQ9UN37 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
VPS4AQ9UN37 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VPS4AQ9UN37 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC17.38■□□□□ 0.37
VPS4AQ9UN37 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC17.38■□□□□ 0.37
VPS4AQ9UN37 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC17.38■□□□□ 0.37
VPS4AQ9UN37 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
VPS4AQ9UN37 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VPS4AQ9UN37 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC17.38■□□□□ 0.37
VPS4AQ9UN37 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
VPS4AQ9UN37 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
VPS4AQ9UN37 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VPS4AQ9UN37 Telomerase-vert.1-201ENST00000363312 438 ntBASIC17.38■□□□□ 0.37
VPS4AQ9UN37 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC17.38■□□□□ 0.37
VPS4AQ9UN37 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC17.38■□□□□ 0.37
VPS4AQ9UN37 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC17.38■□□□□ 0.37
VPS4AQ9UN37 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC17.38■□□□□ 0.37
VPS4AQ9UN37 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC17.38■□□□□ 0.37
VPS4AQ9UN37 PHB2-202ENST00000440277 996 ntTSL 5 BASIC17.38■□□□□ 0.37
VPS4AQ9UN37 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
VPS4AQ9UN37 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
VPS4AQ9UN37 AC083849.1-201ENST00000615227 514 ntBASIC17.38■□□□□ 0.37
VPS4AQ9UN37 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
VPS4AQ9UN37 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC17.38■□□□□ 0.37
VPS4AQ9UN37 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC17.38■□□□□ 0.37
VPS4AQ9UN37 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC17.38■□□□□ 0.37
VPS4AQ9UN37 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VPS4AQ9UN37 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
VPS4AQ9UN37 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC17.38■□□□□ 0.37
VPS4AQ9UN37 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC17.38■□□□□ 0.37
VPS4AQ9UN37 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
VPS4AQ9UN37 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
VPS4AQ9UN37 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
VPS4AQ9UN37 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC17.38■□□□□ 0.37
VPS4AQ9UN37 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC17.38■□□□□ 0.37
VPS4AQ9UN37 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VPS4AQ9UN37 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VPS4AQ9UN37 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC17.37■□□□□ 0.37
VPS4AQ9UN37 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VPS4AQ9UN37 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VPS4AQ9UN37 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VPS4AQ9UN37 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC17.37■□□□□ 0.37
VPS4AQ9UN37 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
VPS4AQ9UN37 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC17.37■□□□□ 0.37
VPS4AQ9UN37 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VPS4AQ9UN37 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
VPS4AQ9UN37 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC17.37■□□□□ 0.37
VPS4AQ9UN37 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
VPS4AQ9UN37 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VPS4AQ9UN37 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VPS4AQ9UN37 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
VPS4AQ9UN37 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VPS4AQ9UN37 STARP1-201ENST00000397973 869 ntBASIC17.37■□□□□ 0.37
VPS4AQ9UN37 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
VPS4AQ9UN37 AL845331.1-201ENST00000424978 1190 ntBASIC17.37■□□□□ 0.37
VPS4AQ9UN37 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC17.37■□□□□ 0.37
VPS4AQ9UN37 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC17.37■□□□□ 0.37
VPS4AQ9UN37 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC17.37■□□□□ 0.37
VPS4AQ9UN37 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC17.37■□□□□ 0.37
VPS4AQ9UN37 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
VPS4AQ9UN37 AC092329.2-201ENST00000598402 547 ntBASIC17.37■□□□□ 0.37
VPS4AQ9UN37 AC092119.3-201ENST00000612618 583 ntBASIC17.37■□□□□ 0.37
VPS4AQ9UN37 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC17.37■□□□□ 0.37
VPS4AQ9UN37 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
VPS4AQ9UN37 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
VPS4AQ9UN37 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
VPS4AQ9UN37 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC17.37■□□□□ 0.37
VPS4AQ9UN37 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VPS4AQ9UN37 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VPS4AQ9UN37 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
VPS4AQ9UN37 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VPS4AQ9UN37 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VPS4AQ9UN37 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VPS4AQ9UN37 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
VPS4AQ9UN37 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VPS4AQ9UN37 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
VPS4AQ9UN37 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC17.37■□□□□ 0.37
VPS4AQ9UN37 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
VPS4AQ9UN37 FLJ13224-201ENST00000313737 1514 ntBASIC17.37■□□□□ 0.37
VPS4AQ9UN37 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms