Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC16.04■□□□□ 0.16
VSX1Q9NZR4 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
VSX1Q9NZR4 KRT89P-201ENST00000620027 1478 ntBASIC16.04■□□□□ 0.16
VSX1Q9NZR4 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
VSX1Q9NZR4 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC16.04■□□□□ 0.16
VSX1Q9NZR4 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC16.04■□□□□ 0.16
VSX1Q9NZR4 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC16.04■□□□□ 0.16
VSX1Q9NZR4 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC16.04■□□□□ 0.16
VSX1Q9NZR4 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VSX1Q9NZR4 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC16.04■□□□□ 0.16
VSX1Q9NZR4 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
VSX1Q9NZR4 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC16.04■□□□□ 0.16
VSX1Q9NZR4 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC16.04■□□□□ 0.16
VSX1Q9NZR4 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC16.04■□□□□ 0.16
VSX1Q9NZR4 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC16.04■□□□□ 0.16
VSX1Q9NZR4 USF2-205ENST00000594064 1179 ntTSL 2 BASIC16.04■□□□□ 0.16
VSX1Q9NZR4 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
VSX1Q9NZR4 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC16.04■□□□□ 0.16
VSX1Q9NZR4 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VSX1Q9NZR4 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC16.04■□□□□ 0.16
VSX1Q9NZR4 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VSX1Q9NZR4 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VSX1Q9NZR4 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
VSX1Q9NZR4 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
VSX1Q9NZR4 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
VSX1Q9NZR4 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
VSX1Q9NZR4 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VSX1Q9NZR4 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VSX1Q9NZR4 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
VSX1Q9NZR4 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC16.03■□□□□ 0.16
VSX1Q9NZR4 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VSX1Q9NZR4 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VSX1Q9NZR4 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
VSX1Q9NZR4 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
VSX1Q9NZR4 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC16.03■□□□□ 0.16
VSX1Q9NZR4 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC16.03■□□□□ 0.16
VSX1Q9NZR4 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC16.03■□□□□ 0.16
VSX1Q9NZR4 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
VSX1Q9NZR4 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC16.03■□□□□ 0.16
VSX1Q9NZR4 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VSX1Q9NZR4 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
VSX1Q9NZR4 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC16.03■□□□□ 0.16
VSX1Q9NZR4 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
VSX1Q9NZR4 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC16.03■□□□□ 0.16
VSX1Q9NZR4 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VSX1Q9NZR4 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
VSX1Q9NZR4 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VSX1Q9NZR4 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
VSX1Q9NZR4 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VSX1Q9NZR4 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC16.03■□□□□ 0.16
VSX1Q9NZR4 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC16.03■□□□□ 0.16
VSX1Q9NZR4 CD70-202ENST00000423145 881 ntTSL 2 BASIC16.03■□□□□ 0.16
VSX1Q9NZR4 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
VSX1Q9NZR4 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC16.03■□□□□ 0.16
VSX1Q9NZR4 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC16.03■□□□□ 0.16
VSX1Q9NZR4 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC16.03■□□□□ 0.16
VSX1Q9NZR4 AL031432.5-201ENST00000641059 760 ntBASIC16.03■□□□□ 0.16
VSX1Q9NZR4 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC16.03■□□□□ 0.16
VSX1Q9NZR4 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
VSX1Q9NZR4 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VSX1Q9NZR4 AC011270.2-201ENST00000624293 2550 ntBASIC16.03■□□□□ 0.16
VSX1Q9NZR4 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VSX1Q9NZR4 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC16.03■□□□□ 0.16
VSX1Q9NZR4 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VSX1Q9NZR4 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VSX1Q9NZR4 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
VSX1Q9NZR4 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
VSX1Q9NZR4 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
VSX1Q9NZR4 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
VSX1Q9NZR4 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC16.02■□□□□ 0.16
VSX1Q9NZR4 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
VSX1Q9NZR4 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
VSX1Q9NZR4 AC100803.2-201ENST00000562459 1963 ntBASIC16.02■□□□□ 0.16
VSX1Q9NZR4 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
VSX1Q9NZR4 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
VSX1Q9NZR4 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC16.02■□□□□ 0.16
VSX1Q9NZR4 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
VSX1Q9NZR4 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.16
VSX1Q9NZR4 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.16
VSX1Q9NZR4 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC16.02■□□□□ 0.16
VSX1Q9NZR4 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC16.02■□□□□ 0.16
VSX1Q9NZR4 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
VSX1Q9NZR4 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
VSX1Q9NZR4 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
VSX1Q9NZR4 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC16.02■□□□□ 0.16
VSX1Q9NZR4 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC16.02■□□□□ 0.16
VSX1Q9NZR4 RASA4DP-201ENST00000460726 1199 ntBASIC16.02■□□□□ 0.16
VSX1Q9NZR4 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC16.02■□□□□ 0.16
VSX1Q9NZR4 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.16
VSX1Q9NZR4 RPS20-210ENST00000523936 899 ntTSL 2 BASIC16.02■□□□□ 0.16
VSX1Q9NZR4 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
VSX1Q9NZR4 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC16.02■□□□□ 0.16
VSX1Q9NZR4 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
VSX1Q9NZR4 AC024563.2-201ENST00000603282 481 ntBASIC16.02■□□□□ 0.16
VSX1Q9NZR4 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC16.02■□□□□ 0.16
VSX1Q9NZR4 AL023973.1-201ENST00000624619 620 ntBASIC16.02■□□□□ 0.16
VSX1Q9NZR4 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
VSX1Q9NZR4 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
VSX1Q9NZR4 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
VSX1Q9NZR4 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC16.02■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms