Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SMARCAL1Q9NZC9 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SMARCAL1Q9NZC9 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC18.91■□□□□ 0.62
SMARCAL1Q9NZC9 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SMARCAL1Q9NZC9 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SMARCAL1Q9NZC9 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
SMARCAL1Q9NZC9 HOXB1-202ENST00000577092 1414 ntBASIC18.91■□□□□ 0.62
SMARCAL1Q9NZC9 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SMARCAL1Q9NZC9 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC18.9■□□□□ 0.62
SMARCAL1Q9NZC9 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
SMARCAL1Q9NZC9 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC18.9■□□□□ 0.62
SMARCAL1Q9NZC9 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
SMARCAL1Q9NZC9 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC18.9■□□□□ 0.62
SMARCAL1Q9NZC9 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC18.9■□□□□ 0.62
SMARCAL1Q9NZC9 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SMARCAL1Q9NZC9 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC18.9■□□□□ 0.62
SMARCAL1Q9NZC9 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC18.9■□□□□ 0.62
SMARCAL1Q9NZC9 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
SMARCAL1Q9NZC9 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SMARCAL1Q9NZC9 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SMARCAL1Q9NZC9 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
SMARCAL1Q9NZC9 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
SMARCAL1Q9NZC9 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC18.9■□□□□ 0.62
SMARCAL1Q9NZC9 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC18.9■□□□□ 0.62
SMARCAL1Q9NZC9 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC18.9■□□□□ 0.62
SMARCAL1Q9NZC9 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC18.9■□□□□ 0.62
SMARCAL1Q9NZC9 CRYGFP-201ENST00000418459 633 ntBASIC18.9■□□□□ 0.62
SMARCAL1Q9NZC9 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC18.9■□□□□ 0.62
SMARCAL1Q9NZC9 AC116562.2-201ENST00000507042 360 ntBASIC18.9■□□□□ 0.62
SMARCAL1Q9NZC9 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC18.9■□□□□ 0.62
SMARCAL1Q9NZC9 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC18.9■□□□□ 0.62
SMARCAL1Q9NZC9 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC18.9■□□□□ 0.62
SMARCAL1Q9NZC9 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC18.9■□□□□ 0.62
SMARCAL1Q9NZC9 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SMARCAL1Q9NZC9 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
SMARCAL1Q9NZC9 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SMARCAL1Q9NZC9 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
SMARCAL1Q9NZC9 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SMARCAL1Q9NZC9 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SMARCAL1Q9NZC9 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SMARCAL1Q9NZC9 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SMARCAL1Q9NZC9 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
SMARCAL1Q9NZC9 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SMARCAL1Q9NZC9 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SMARCAL1Q9NZC9 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC18.9■□□□□ 0.62
SMARCAL1Q9NZC9 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC18.9■□□□□ 0.62
SMARCAL1Q9NZC9 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
SMARCAL1Q9NZC9 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
SMARCAL1Q9NZC9 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.62
SMARCAL1Q9NZC9 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SMARCAL1Q9NZC9 AC133963.1-201ENST00000504166 1679 ntBASIC18.89■□□□□ 0.61
SMARCAL1Q9NZC9 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SMARCAL1Q9NZC9 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC18.89■□□□□ 0.61
SMARCAL1Q9NZC9 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SMARCAL1Q9NZC9 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SMARCAL1Q9NZC9 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
SMARCAL1Q9NZC9 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC18.89■□□□□ 0.61
SMARCAL1Q9NZC9 SNORA78-201ENST00000459373 127 ntBASIC18.89■□□□□ 0.61
SMARCAL1Q9NZC9 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC18.89■□□□□ 0.61
SMARCAL1Q9NZC9 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC18.89■□□□□ 0.61
SMARCAL1Q9NZC9 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SMARCAL1Q9NZC9 CR769767.2-201ENST00000622735 460 ntBASIC18.89■□□□□ 0.61
SMARCAL1Q9NZC9 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SMARCAL1Q9NZC9 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC18.89■□□□□ 0.61
SMARCAL1Q9NZC9 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
SMARCAL1Q9NZC9 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC18.89■□□□□ 0.61
SMARCAL1Q9NZC9 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
SMARCAL1Q9NZC9 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
SMARCAL1Q9NZC9 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SMARCAL1Q9NZC9 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SMARCAL1Q9NZC9 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
SMARCAL1Q9NZC9 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
SMARCAL1Q9NZC9 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SMARCAL1Q9NZC9 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SMARCAL1Q9NZC9 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC18.88■□□□□ 0.61
SMARCAL1Q9NZC9 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC18.88■□□□□ 0.61
SMARCAL1Q9NZC9 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC18.88■□□□□ 0.61
SMARCAL1Q9NZC9 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SMARCAL1Q9NZC9 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SMARCAL1Q9NZC9 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SMARCAL1Q9NZC9 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SMARCAL1Q9NZC9 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC18.88■□□□□ 0.61
SMARCAL1Q9NZC9 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SMARCAL1Q9NZC9 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SMARCAL1Q9NZC9 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC18.88■□□□□ 0.61
SMARCAL1Q9NZC9 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SMARCAL1Q9NZC9 AP003071.4-201ENST00000562276 1284 ntBASIC18.88■□□□□ 0.61
SMARCAL1Q9NZC9 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC18.88■□□□□ 0.61
SMARCAL1Q9NZC9 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC18.88■□□□□ 0.61
SMARCAL1Q9NZC9 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC18.88■□□□□ 0.61
SMARCAL1Q9NZC9 DGCR10-201ENST00000609839 495 ntBASIC18.88■□□□□ 0.61
SMARCAL1Q9NZC9 REXO1L10P-201ENST00000615707 1290 ntBASIC18.88■□□□□ 0.61
SMARCAL1Q9NZC9 REXO1L12P-201ENST00000622156 912 ntBASIC18.88■□□□□ 0.61
SMARCAL1Q9NZC9 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
SMARCAL1Q9NZC9 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SMARCAL1Q9NZC9 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
SMARCAL1Q9NZC9 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SMARCAL1Q9NZC9 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SMARCAL1Q9NZC9 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SMARCAL1Q9NZC9 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms