Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 TSPY12P-201ENST00000421279 868 ntBASIC17.36■□□□□ 0.37
CUEDC1Q9NWM3 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC17.36■□□□□ 0.37
CUEDC1Q9NWM3 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC17.36■□□□□ 0.37
CUEDC1Q9NWM3 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC17.36■□□□□ 0.37
CUEDC1Q9NWM3 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC17.36■□□□□ 0.37
CUEDC1Q9NWM3 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
CUEDC1Q9NWM3 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC17.36■□□□□ 0.37
CUEDC1Q9NWM3 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC17.36■□□□□ 0.37
CUEDC1Q9NWM3 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CUEDC1Q9NWM3 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CUEDC1Q9NWM3 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC17.36■□□□□ 0.37
CUEDC1Q9NWM3 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CUEDC1Q9NWM3 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC17.36■□□□□ 0.37
CUEDC1Q9NWM3 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC17.36■□□□□ 0.37
CUEDC1Q9NWM3 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CUEDC1Q9NWM3 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CUEDC1Q9NWM3 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
CUEDC1Q9NWM3 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CUEDC1Q9NWM3 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC17.36■□□□□ 0.37
CUEDC1Q9NWM3 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CUEDC1Q9NWM3 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CUEDC1Q9NWM3 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CUEDC1Q9NWM3 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CUEDC1Q9NWM3 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CUEDC1Q9NWM3 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CUEDC1Q9NWM3 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CUEDC1Q9NWM3 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CUEDC1Q9NWM3 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC17.35■□□□□ 0.37
CUEDC1Q9NWM3 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC17.35■□□□□ 0.37
CUEDC1Q9NWM3 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC17.35■□□□□ 0.37
CUEDC1Q9NWM3 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
CUEDC1Q9NWM3 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CUEDC1Q9NWM3 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CUEDC1Q9NWM3 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CUEDC1Q9NWM3 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CUEDC1Q9NWM3 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CUEDC1Q9NWM3 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CUEDC1Q9NWM3 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC17.35■□□□□ 0.37
CUEDC1Q9NWM3 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC17.35■□□□□ 0.37
CUEDC1Q9NWM3 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC17.35■□□□□ 0.37
CUEDC1Q9NWM3 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC17.35■□□□□ 0.37
CUEDC1Q9NWM3 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
CUEDC1Q9NWM3 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC17.35■□□□□ 0.37
CUEDC1Q9NWM3 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
CUEDC1Q9NWM3 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CUEDC1Q9NWM3 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CUEDC1Q9NWM3 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CUEDC1Q9NWM3 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC17.35■□□□□ 0.37
CUEDC1Q9NWM3 FLJ13224-201ENST00000313737 1514 ntBASIC17.35■□□□□ 0.37
CUEDC1Q9NWM3 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC17.35■□□□□ 0.37
CUEDC1Q9NWM3 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CUEDC1Q9NWM3 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC17.35■□□□□ 0.37
CUEDC1Q9NWM3 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CUEDC1Q9NWM3 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CUEDC1Q9NWM3 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC17.35■□□□□ 0.37
CUEDC1Q9NWM3 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CUEDC1Q9NWM3 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
CUEDC1Q9NWM3 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CUEDC1Q9NWM3 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CUEDC1Q9NWM3 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CUEDC1Q9NWM3 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
CUEDC1Q9NWM3 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CUEDC1Q9NWM3 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CUEDC1Q9NWM3 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CUEDC1Q9NWM3 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CUEDC1Q9NWM3 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CUEDC1Q9NWM3 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
CUEDC1Q9NWM3 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CUEDC1Q9NWM3 KRT18P65-201ENST00000439811 1286 ntBASIC17.34■□□□□ 0.37
CUEDC1Q9NWM3 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
CUEDC1Q9NWM3 FDX1P1-201ENST00000449115 551 ntBASIC17.34■□□□□ 0.37
CUEDC1Q9NWM3 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
CUEDC1Q9NWM3 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC17.34■□□□□ 0.37
CUEDC1Q9NWM3 KRT8P26-201ENST00000534154 1276 ntBASIC17.34■□□□□ 0.37
CUEDC1Q9NWM3 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CUEDC1Q9NWM3 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
CUEDC1Q9NWM3 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CUEDC1Q9NWM3 AC020916.1-201ENST00000587762 1774 ntBASIC17.34■□□□□ 0.37
CUEDC1Q9NWM3 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC17.34■□□□□ 0.37
CUEDC1Q9NWM3 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
CUEDC1Q9NWM3 GXYLT1P4-201ENST00000613576 1192 ntBASIC17.34■□□□□ 0.37
CUEDC1Q9NWM3 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC17.34■□□□□ 0.37
CUEDC1Q9NWM3 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
CUEDC1Q9NWM3 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC17.34■□□□□ 0.37
CUEDC1Q9NWM3 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
CUEDC1Q9NWM3 AC016734.2-201ENST00000624325 1377 ntBASIC17.34■□□□□ 0.37
CUEDC1Q9NWM3 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
CUEDC1Q9NWM3 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CUEDC1Q9NWM3 CD276-203ENST00000537340 2439 ntTSL 2 BASIC17.33■□□□□ 0.37
CUEDC1Q9NWM3 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CUEDC1Q9NWM3 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CUEDC1Q9NWM3 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CUEDC1Q9NWM3 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC17.33■□□□□ 0.37
CUEDC1Q9NWM3 AC100803.2-201ENST00000562459 1963 ntBASIC17.33■□□□□ 0.37
CUEDC1Q9NWM3 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CUEDC1Q9NWM3 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CUEDC1Q9NWM3 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC17.33■□□□□ 0.37
CUEDC1Q9NWM3 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC17.33■□□□□ 0.37
CUEDC1Q9NWM3 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC17.33■□□□□ 0.37
CUEDC1Q9NWM3 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms