Protein–RNA interactions for Protein: Q96KN3

PKNOX2, Homeobox protein PKNOX2, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX2Q96KN3 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
PKNOX2Q96KN3 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
PKNOX2Q96KN3 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PKNOX2Q96KN3 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PKNOX2Q96KN3 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
PKNOX2Q96KN3 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
PKNOX2Q96KN3 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
PKNOX2Q96KN3 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PKNOX2Q96KN3 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
PKNOX2Q96KN3 BMP1-204ENST00000397814 836 ntTSL 4 BASIC19.44■□□□□ 0.7
PKNOX2Q96KN3 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC19.44■□□□□ 0.7
PKNOX2Q96KN3 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC19.44■□□□□ 0.7
PKNOX2Q96KN3 GALNS-213ENST00000569433 723 ntTSL 3 BASIC19.44■□□□□ 0.7
PKNOX2Q96KN3 AC005837.3-201ENST00000612163 286 ntBASIC19.44■□□□□ 0.7
PKNOX2Q96KN3 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC19.44■□□□□ 0.7
PKNOX2Q96KN3 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
PKNOX2Q96KN3 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
PKNOX2Q96KN3 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PKNOX2Q96KN3 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
PKNOX2Q96KN3 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
PKNOX2Q96KN3 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
PKNOX2Q96KN3 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PKNOX2Q96KN3 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC19.44■□□□□ 0.7
PKNOX2Q96KN3 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC19.44■□□□□ 0.7
PKNOX2Q96KN3 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PKNOX2Q96KN3 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
PKNOX2Q96KN3 SYBU-204ENST00000408908 2983 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
PKNOX2Q96KN3 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
PKNOX2Q96KN3 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
PKNOX2Q96KN3 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
PKNOX2Q96KN3 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC19.43■□□□□ 0.7
PKNOX2Q96KN3 AC139749.1-202ENST00000617529 3139 ntBASIC19.43■□□□□ 0.7
PKNOX2Q96KN3 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
PKNOX2Q96KN3 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
PKNOX2Q96KN3 SPOCK3-218ENST00000511531 2908 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
PKNOX2Q96KN3 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
PKNOX2Q96KN3 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC19.43■□□□□ 0.7
PKNOX2Q96KN3 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
PKNOX2Q96KN3 AC007191.1-201ENST00000623179 2995 ntBASIC19.43■□□□□ 0.7
PKNOX2Q96KN3 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
PKNOX2Q96KN3 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC19.43■□□□□ 0.7
PKNOX2Q96KN3 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PKNOX2Q96KN3 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC19.43■□□□□ 0.7
PKNOX2Q96KN3 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
PKNOX2Q96KN3 AC104417.2-201ENST00000562989 1793 ntBASIC19.43■□□□□ 0.7
PKNOX2Q96KN3 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
PKNOX2Q96KN3 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC19.43■□□□□ 0.7
PKNOX2Q96KN3 BRI3-207ENST00000539286 699 ntTSL 2 BASIC19.43■□□□□ 0.7
PKNOX2Q96KN3 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
PKNOX2Q96KN3 AC010536.3-201ENST00000620306 533 ntBASIC19.43■□□□□ 0.7
PKNOX2Q96KN3 AC010327.5-201ENST00000586923 3061 ntBASIC19.43■□□□□ 0.7
PKNOX2Q96KN3 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC19.43■□□□□ 0.7
PKNOX2Q96KN3 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
PKNOX2Q96KN3 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
PKNOX2Q96KN3 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
PKNOX2Q96KN3 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
PKNOX2Q96KN3 AL121761.2-201ENST00000598007 1648 ntBASIC19.43■□□□□ 0.7
PKNOX2Q96KN3 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PKNOX2Q96KN3 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
PKNOX2Q96KN3 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
PKNOX2Q96KN3 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
PKNOX2Q96KN3 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC19.42■□□□□ 0.7
PKNOX2Q96KN3 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
PKNOX2Q96KN3 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC19.42■□□□□ 0.7
PKNOX2Q96KN3 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
PKNOX2Q96KN3 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
PKNOX2Q96KN3 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
PKNOX2Q96KN3 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PKNOX2Q96KN3 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
PKNOX2Q96KN3 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC19.42■□□□□ 0.7
PKNOX2Q96KN3 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
PKNOX2Q96KN3 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PKNOX2Q96KN3 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
PKNOX2Q96KN3 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PKNOX2Q96KN3 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
PKNOX2Q96KN3 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC19.42■□□□□ 0.7
PKNOX2Q96KN3 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PKNOX2Q96KN3 MEX3B-201ENST00000329713 3528 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PKNOX2Q96KN3 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC19.42■□□□□ 0.7
PKNOX2Q96KN3 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC19.42■□□□□ 0.7
PKNOX2Q96KN3 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
PKNOX2Q96KN3 GSN-203ENST00000373808 2664 ntTSL 2 BASIC19.42■□□□□ 0.7
PKNOX2Q96KN3 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PKNOX2Q96KN3 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PKNOX2Q96KN3 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PKNOX2Q96KN3 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC19.41■□□□□ 0.7
PKNOX2Q96KN3 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
PKNOX2Q96KN3 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
PKNOX2Q96KN3 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PKNOX2Q96KN3 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
PKNOX2Q96KN3 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PKNOX2Q96KN3 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PKNOX2Q96KN3 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
PKNOX2Q96KN3 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
PKNOX2Q96KN3 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
PKNOX2Q96KN3 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
PKNOX2Q96KN3 TCAF2-202ENST00000411935 2906 ntTSL 5 BASIC19.41■□□□□ 0.7
PKNOX2Q96KN3 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
PKNOX2Q96KN3 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
PKNOX2Q96KN3 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms