Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
VMP1Q96GC9 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VMP1Q96GC9 AC126763.1-201ENST00000552015 2118 ntBASIC17.21■□□□□ 0.35
VMP1Q96GC9 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VMP1Q96GC9 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
VMP1Q96GC9 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
VMP1Q96GC9 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC17.21■□□□□ 0.35
VMP1Q96GC9 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
VMP1Q96GC9 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
VMP1Q96GC9 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
VMP1Q96GC9 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VMP1Q96GC9 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
VMP1Q96GC9 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
VMP1Q96GC9 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VMP1Q96GC9 DAP-202ENST00000432074 1048 ntTSL 2 BASIC17.21■□□□□ 0.35
VMP1Q96GC9 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC17.21■□□□□ 0.35
VMP1Q96GC9 CLN6-204ENST00000564752 900 ntTSL 3 BASIC17.21■□□□□ 0.35
VMP1Q96GC9 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC17.21■□□□□ 0.35
VMP1Q96GC9 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
VMP1Q96GC9 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VMP1Q96GC9 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
VMP1Q96GC9 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
VMP1Q96GC9 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VMP1Q96GC9 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VMP1Q96GC9 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC17.21■□□□□ 0.35
VMP1Q96GC9 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
VMP1Q96GC9 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC17.21■□□□□ 0.35
VMP1Q96GC9 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
VMP1Q96GC9 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VMP1Q96GC9 COBL-210ENST00000632460 1941 ntTSL 5 BASIC17.21■□□□□ 0.35
VMP1Q96GC9 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC17.21■□□□□ 0.35
VMP1Q96GC9 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VMP1Q96GC9 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC17.21■□□□□ 0.34
VMP1Q96GC9 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
VMP1Q96GC9 LINC01311-201ENST00000565162 1445 ntBASIC17.21■□□□□ 0.34
VMP1Q96GC9 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC17.21■□□□□ 0.34
VMP1Q96GC9 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VMP1Q96GC9 SNAI3-AS1-205ENST00000568633 2096 ntBASIC17.2■□□□□ 0.34
VMP1Q96GC9 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VMP1Q96GC9 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VMP1Q96GC9 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VMP1Q96GC9 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VMP1Q96GC9 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
VMP1Q96GC9 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VMP1Q96GC9 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VMP1Q96GC9 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC17.2■□□□□ 0.34
VMP1Q96GC9 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
VMP1Q96GC9 PCDHA12-202ENST00000613593 2588 ntBASIC17.2■□□□□ 0.34
VMP1Q96GC9 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC17.2■□□□□ 0.34
VMP1Q96GC9 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC17.2■□□□□ 0.34
VMP1Q96GC9 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VMP1Q96GC9 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC17.2■□□□□ 0.34
VMP1Q96GC9 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VMP1Q96GC9 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VMP1Q96GC9 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VMP1Q96GC9 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC17.2■□□□□ 0.34
VMP1Q96GC9 LY6E-213ENST00000522528 606 ntTSL 3 BASIC17.2■□□□□ 0.34
VMP1Q96GC9 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC17.2■□□□□ 0.34
VMP1Q96GC9 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC17.2■□□□□ 0.34
VMP1Q96GC9 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VMP1Q96GC9 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC17.2■□□□□ 0.34
VMP1Q96GC9 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC17.2■□□□□ 0.34
VMP1Q96GC9 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VMP1Q96GC9 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VMP1Q96GC9 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
VMP1Q96GC9 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
VMP1Q96GC9 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
VMP1Q96GC9 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VMP1Q96GC9 KRT8P50-201ENST00000562022 1438 ntBASIC17.2■□□□□ 0.34
VMP1Q96GC9 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VMP1Q96GC9 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC17.2■□□□□ 0.34
VMP1Q96GC9 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VMP1Q96GC9 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VMP1Q96GC9 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC17.2■□□□□ 0.34
VMP1Q96GC9 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VMP1Q96GC9 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VMP1Q96GC9 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC17.19■□□□□ 0.34
VMP1Q96GC9 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC17.19■□□□□ 0.34
VMP1Q96GC9 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VMP1Q96GC9 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
VMP1Q96GC9 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VMP1Q96GC9 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VMP1Q96GC9 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
VMP1Q96GC9 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC17.19■□□□□ 0.34
VMP1Q96GC9 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VMP1Q96GC9 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
VMP1Q96GC9 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
VMP1Q96GC9 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VMP1Q96GC9 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC17.19■□□□□ 0.34
VMP1Q96GC9 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
VMP1Q96GC9 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VMP1Q96GC9 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VMP1Q96GC9 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC17.19■□□□□ 0.34
VMP1Q96GC9 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC17.19■□□□□ 0.34
VMP1Q96GC9 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
VMP1Q96GC9 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC17.19■□□□□ 0.34
VMP1Q96GC9 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC17.19■□□□□ 0.34
VMP1Q96GC9 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC17.19■□□□□ 0.34
VMP1Q96GC9 HYMAI.1-201ENST00000620949 238 ntBASIC17.19■□□□□ 0.34
VMP1Q96GC9 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms