Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 AC073621.1-201ENST00000392730 636 ntBASIC18.19■□□□□ 0.5
CHFRQ96EP1 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CHFRQ96EP1 RPSAP43-201ENST00000402237 625 ntBASIC18.19■□□□□ 0.5
CHFRQ96EP1 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CHFRQ96EP1 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC18.19■□□□□ 0.5
CHFRQ96EP1 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CHFRQ96EP1 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC18.19■□□□□ 0.5
CHFRQ96EP1 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC18.19■□□□□ 0.5
CHFRQ96EP1 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC18.19■□□□□ 0.5
CHFRQ96EP1 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC18.19■□□□□ 0.5
CHFRQ96EP1 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC18.19■□□□□ 0.5
CHFRQ96EP1 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
CHFRQ96EP1 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC18.19■□□□□ 0.5
CHFRQ96EP1 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CHFRQ96EP1 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CHFRQ96EP1 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CHFRQ96EP1 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CHFRQ96EP1 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CHFRQ96EP1 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC18.18■□□□□ 0.5
CHFRQ96EP1 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC18.18■□□□□ 0.5
CHFRQ96EP1 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CHFRQ96EP1 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CHFRQ96EP1 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CHFRQ96EP1 CROCCP3-202ENST00000420820 1947 ntBASIC18.18■□□□□ 0.5
CHFRQ96EP1 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
CHFRQ96EP1 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
CHFRQ96EP1 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CHFRQ96EP1 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CHFRQ96EP1 GPX1P2-201ENST00000429271 606 ntBASIC18.18■□□□□ 0.5
CHFRQ96EP1 FIS1-203ENST00000442303 631 ntTSL 3 BASIC18.18■□□□□ 0.5
CHFRQ96EP1 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CHFRQ96EP1 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CHFRQ96EP1 MSRA-206ENST00000521209 814 ntTSL 3 BASIC18.18■□□□□ 0.5
CHFRQ96EP1 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC18.18■□□□□ 0.5
CHFRQ96EP1 RPS29-206ENST00000557111 488 ntTSL 2 BASIC18.18■□□□□ 0.5
CHFRQ96EP1 AC010327.4-202ENST00000591484 748 ntBASIC18.18■□□□□ 0.5
CHFRQ96EP1 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CHFRQ96EP1 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
CHFRQ96EP1 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CHFRQ96EP1 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC18.18■□□□□ 0.5
CHFRQ96EP1 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC18.18■□□□□ 0.5
CHFRQ96EP1 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CHFRQ96EP1 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC18.18■□□□□ 0.5
CHFRQ96EP1 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC18.18■□□□□ 0.5
CHFRQ96EP1 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CHFRQ96EP1 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CHFRQ96EP1 SP100-208ENST00000427101 1922 ntTSL 2 BASIC18.17■□□□□ 0.5
CHFRQ96EP1 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
CHFRQ96EP1 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CHFRQ96EP1 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CHFRQ96EP1 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CHFRQ96EP1 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CHFRQ96EP1 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CHFRQ96EP1 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC18.17■□□□□ 0.5
CHFRQ96EP1 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC18.17■□□□□ 0.5
CHFRQ96EP1 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC18.17■□□□□ 0.5
CHFRQ96EP1 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
CHFRQ96EP1 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
CHFRQ96EP1 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC18.17■□□□□ 0.5
CHFRQ96EP1 YBX2P1-201ENST00000394192 760 ntBASIC18.17■□□□□ 0.5
CHFRQ96EP1 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CHFRQ96EP1 UPF3AP3-201ENST00000420996 769 ntBASIC18.17■□□□□ 0.5
CHFRQ96EP1 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC18.17■□□□□ 0.5
CHFRQ96EP1 AC007967.2-201ENST00000432613 625 ntBASIC18.17■□□□□ 0.5
CHFRQ96EP1 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC18.17■□□□□ 0.5
CHFRQ96EP1 AC122714.2-201ENST00000502787 707 ntBASIC18.17■□□□□ 0.5
CHFRQ96EP1 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC18.17■□□□□ 0.5
CHFRQ96EP1 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CHFRQ96EP1 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
CHFRQ96EP1 AL022326.1-202ENST00000641533 845 ntBASIC18.17■□□□□ 0.5
CHFRQ96EP1 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CHFRQ96EP1 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CHFRQ96EP1 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CHFRQ96EP1 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CHFRQ96EP1 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CHFRQ96EP1 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CHFRQ96EP1 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC18.16■□□□□ 0.5
CHFRQ96EP1 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CHFRQ96EP1 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CHFRQ96EP1 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CHFRQ96EP1 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
CHFRQ96EP1 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CHFRQ96EP1 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CHFRQ96EP1 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC18.16■□□□□ 0.5
CHFRQ96EP1 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC18.16■□□□□ 0.5
CHFRQ96EP1 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CHFRQ96EP1 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CHFRQ96EP1 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CHFRQ96EP1 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC18.16■□□□□ 0.5
CHFRQ96EP1 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC18.16■□□□□ 0.5
CHFRQ96EP1 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC18.16■□□□□ 0.5
CHFRQ96EP1 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC18.16■□□□□ 0.5
CHFRQ96EP1 SDCCAG3P1-201ENST00000589292 1150 ntBASIC18.16■□□□□ 0.5
CHFRQ96EP1 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC18.16■□□□□ 0.5
CHFRQ96EP1 AL691403.2-201ENST00000618460 490 ntBASIC18.16■□□□□ 0.5
CHFRQ96EP1 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CHFRQ96EP1 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
CHFRQ96EP1 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
CHFRQ96EP1 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CHFRQ96EP1 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms