Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SMC1BQ8NDV3 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SMC1BQ8NDV3 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SMC1BQ8NDV3 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
SMC1BQ8NDV3 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SMC1BQ8NDV3 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC21.17■□□□□ 0.98
SMC1BQ8NDV3 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC21.17■□□□□ 0.98
SMC1BQ8NDV3 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
SMC1BQ8NDV3 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SMC1BQ8NDV3 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SMC1BQ8NDV3 AC003669.1-201ENST00000334569 611 ntBASIC21.17■□□□□ 0.98
SMC1BQ8NDV3 MIR943-201ENST00000401286 94 ntBASIC21.17■□□□□ 0.98
SMC1BQ8NDV3 ATP5G2P4-201ENST00000442175 420 ntBASIC21.17■□□□□ 0.98
SMC1BQ8NDV3 CRB3P1-201ENST00000449338 276 ntBASIC21.17■□□□□ 0.98
SMC1BQ8NDV3 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
SMC1BQ8NDV3 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC21.17■□□□□ 0.98
SMC1BQ8NDV3 CIPC-205ENST00000555437 566 ntTSL 3 BASIC21.17■□□□□ 0.98
SMC1BQ8NDV3 AC051619.7-201ENST00000568314 623 ntBASIC21.17■□□□□ 0.98
SMC1BQ8NDV3 MIR6799-201ENST00000620297 69 ntBASIC21.17■□□□□ 0.98
SMC1BQ8NDV3 AC073592.5-201ENST00000624854 528 ntBASIC21.17■□□□□ 0.98
SMC1BQ8NDV3 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SMC1BQ8NDV3 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
SMC1BQ8NDV3 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC21.17■□□□□ 0.98
SMC1BQ8NDV3 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC21.17■□□□□ 0.98
SMC1BQ8NDV3 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SMC1BQ8NDV3 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SMC1BQ8NDV3 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC21.17■□□□□ 0.98
SMC1BQ8NDV3 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
SMC1BQ8NDV3 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SMC1BQ8NDV3 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC21.17■□□□□ 0.98
SMC1BQ8NDV3 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
SMC1BQ8NDV3 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SMC1BQ8NDV3 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SMC1BQ8NDV3 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SMC1BQ8NDV3 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
SMC1BQ8NDV3 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SMC1BQ8NDV3 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SMC1BQ8NDV3 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC21.17■□□□□ 0.98
SMC1BQ8NDV3 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SMC1BQ8NDV3 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SMC1BQ8NDV3 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SMC1BQ8NDV3 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC21.16■□□□□ 0.98
SMC1BQ8NDV3 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SMC1BQ8NDV3 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC21.16■□□□□ 0.98
SMC1BQ8NDV3 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC21.16■□□□□ 0.98
SMC1BQ8NDV3 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SMC1BQ8NDV3 TBC1D3P5-201ENST00000579401 1545 ntBASIC21.16■□□□□ 0.98
SMC1BQ8NDV3 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC21.16■□□□□ 0.98
SMC1BQ8NDV3 NCF1C-201ENST00000438382 1427 ntBASIC21.16■□□□□ 0.98
SMC1BQ8NDV3 CENPM-205ENST00000404067 905 ntTSL 3 BASIC21.16■□□□□ 0.98
SMC1BQ8NDV3 AL627223.1-201ENST00000416693 442 ntBASIC21.16■□□□□ 0.98
SMC1BQ8NDV3 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SMC1BQ8NDV3 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC21.16■□□□□ 0.98
SMC1BQ8NDV3 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC21.16■□□□□ 0.98
SMC1BQ8NDV3 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC21.16■□□□□ 0.98
SMC1BQ8NDV3 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
SMC1BQ8NDV3 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SMC1BQ8NDV3 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC21.16■□□□□ 0.98
SMC1BQ8NDV3 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SMC1BQ8NDV3 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SMC1BQ8NDV3 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SMC1BQ8NDV3 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SMC1BQ8NDV3 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SMC1BQ8NDV3 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC21.15■□□□□ 0.98
SMC1BQ8NDV3 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SMC1BQ8NDV3 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SMC1BQ8NDV3 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC21.15■□□□□ 0.98
SMC1BQ8NDV3 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
SMC1BQ8NDV3 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC21.15■□□□□ 0.98
SMC1BQ8NDV3 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC21.15■□□□□ 0.98
SMC1BQ8NDV3 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
SMC1BQ8NDV3 AC068137.2-201ENST00000605408 478 ntBASIC21.15■□□□□ 0.98
SMC1BQ8NDV3 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SMC1BQ8NDV3 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC21.15■□□□□ 0.98
SMC1BQ8NDV3 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SMC1BQ8NDV3 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SMC1BQ8NDV3 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC21.15■□□□□ 0.98
SMC1BQ8NDV3 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SMC1BQ8NDV3 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC21.14■□□□□ 0.98
SMC1BQ8NDV3 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
SMC1BQ8NDV3 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC21.14■□□□□ 0.98
SMC1BQ8NDV3 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
SMC1BQ8NDV3 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
SMC1BQ8NDV3 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
SMC1BQ8NDV3 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC21.14■□□□□ 0.98
SMC1BQ8NDV3 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC21.14■□□□□ 0.98
SMC1BQ8NDV3 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC21.14■□□□□ 0.97
SMC1BQ8NDV3 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC21.14■□□□□ 0.97
SMC1BQ8NDV3 IRX1P1-201ENST00000438849 1838 ntBASIC21.14■□□□□ 0.97
SMC1BQ8NDV3 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC21.14■□□□□ 0.97
SMC1BQ8NDV3 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
SMC1BQ8NDV3 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC21.14■□□□□ 0.97
SMC1BQ8NDV3 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC21.14■□□□□ 0.97
SMC1BQ8NDV3 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
SMC1BQ8NDV3 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC21.14■□□□□ 0.97
SMC1BQ8NDV3 RAC2-204ENST00000406508 893 ntTSL 5 BASIC21.14■□□□□ 0.97
SMC1BQ8NDV3 NME2P1-201ENST00000426182 414 ntBASIC21.14■□□□□ 0.97
SMC1BQ8NDV3 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC21.14■□□□□ 0.97
SMC1BQ8NDV3 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC21.14■□□□□ 0.97
SMC1BQ8NDV3 RIN3-211ENST00000557762 517 ntTSL 3 BASIC21.14■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms