Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC15.02■□□□□ -0
CCDC28AQ8IWP9 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC15.02■□□□□ -0
CCDC28AQ8IWP9 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC15.02■□□□□ -0
CCDC28AQ8IWP9 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC15.02■□□□□ -0
CCDC28AQ8IWP9 MIR6821-201ENST00000617625 74 ntBASIC15.02■□□□□ -0
CCDC28AQ8IWP9 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC15.02■□□□□ -0
CCDC28AQ8IWP9 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
CCDC28AQ8IWP9 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC15.02□□□□□ -0.01
CCDC28AQ8IWP9 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
CCDC28AQ8IWP9 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
CCDC28AQ8IWP9 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
CCDC28AQ8IWP9 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC15.02□□□□□ -0.01
CCDC28AQ8IWP9 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
CCDC28AQ8IWP9 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC15.02□□□□□ -0.01
CCDC28AQ8IWP9 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
CCDC28AQ8IWP9 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC15.02□□□□□ -0.01
CCDC28AQ8IWP9 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC15.02□□□□□ -0.01
CCDC28AQ8IWP9 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
CCDC28AQ8IWP9 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
CCDC28AQ8IWP9 AL513523.2-202ENST00000427283 2040 ntBASIC15.02□□□□□ -0.01
CCDC28AQ8IWP9 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
CCDC28AQ8IWP9 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
CCDC28AQ8IWP9 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
CCDC28AQ8IWP9 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC15.02□□□□□ -0.01
CCDC28AQ8IWP9 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC15.02□□□□□ -0.01
CCDC28AQ8IWP9 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC15.01□□□□□ -0.01
CCDC28AQ8IWP9 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
CCDC28AQ8IWP9 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC28AQ8IWP9 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC15.01□□□□□ -0.01
CCDC28AQ8IWP9 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC28AQ8IWP9 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC28AQ8IWP9 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC15.01□□□□□ -0.01
CCDC28AQ8IWP9 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
CCDC28AQ8IWP9 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC28AQ8IWP9 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC28AQ8IWP9 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
CCDC28AQ8IWP9 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC28AQ8IWP9 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC28AQ8IWP9 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC28AQ8IWP9 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC28AQ8IWP9 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC28AQ8IWP9 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC28AQ8IWP9 NORAD-201ENST00000565493 5339 ntBASIC15.01□□□□□ -0.01
CCDC28AQ8IWP9 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC15.01□□□□□ -0.01
CCDC28AQ8IWP9 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC28AQ8IWP9 GXYLT1P2-201ENST00000433312 1230 ntBASIC15.01□□□□□ -0.01
CCDC28AQ8IWP9 PLD4-205ENST00000553861 667 ntTSL 2 BASIC15.01□□□□□ -0.01
CCDC28AQ8IWP9 SLC7A5P1-201ENST00000568957 537 ntBASIC15.01□□□□□ -0.01
CCDC28AQ8IWP9 AL031963.3-201ENST00000606441 850 ntBASIC15.01□□□□□ -0.01
CCDC28AQ8IWP9 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC28AQ8IWP9 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC15.01□□□□□ -0.01
CCDC28AQ8IWP9 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC28AQ8IWP9 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC28AQ8IWP9 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC28AQ8IWP9 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
CCDC28AQ8IWP9 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC28AQ8IWP9 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC15.01□□□□□ -0.01
CCDC28AQ8IWP9 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
CCDC28AQ8IWP9 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
CCDC28AQ8IWP9 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC15.01□□□□□ -0.01
CCDC28AQ8IWP9 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC28AQ8IWP9 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC28AQ8IWP9 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC28AQ8IWP9 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC28AQ8IWP9 AL009178.2-201ENST00000597278 2719 ntBASIC15.01□□□□□ -0.01
CCDC28AQ8IWP9 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC28AQ8IWP9 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC28AQ8IWP9 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC28AQ8IWP9 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CCDC28AQ8IWP9 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
CCDC28AQ8IWP9 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC15□□□□□ -0.01
CCDC28AQ8IWP9 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC15□□□□□ -0.01
CCDC28AQ8IWP9 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC15□□□□□ -0.01
CCDC28AQ8IWP9 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC15□□□□□ -0.01
CCDC28AQ8IWP9 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CCDC28AQ8IWP9 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
CCDC28AQ8IWP9 AC126755.1-201ENST00000525846 6405 ntBASIC15□□□□□ -0.01
CCDC28AQ8IWP9 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
CCDC28AQ8IWP9 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CCDC28AQ8IWP9 AC093010.1-201ENST00000473625 1624 ntBASIC15□□□□□ -0.01
CCDC28AQ8IWP9 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC15□□□□□ -0.01
CCDC28AQ8IWP9 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
CCDC28AQ8IWP9 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC15□□□□□ -0.01
CCDC28AQ8IWP9 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CCDC28AQ8IWP9 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CCDC28AQ8IWP9 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC15□□□□□ -0.01
CCDC28AQ8IWP9 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC15□□□□□ -0.01
CCDC28AQ8IWP9 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC15□□□□□ -0.01
CCDC28AQ8IWP9 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CCDC28AQ8IWP9 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC15□□□□□ -0.01
CCDC28AQ8IWP9 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
CCDC28AQ8IWP9 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC15□□□□□ -0.01
CCDC28AQ8IWP9 AC083906.6-201ENST00000641366 219 ntBASIC15□□□□□ -0.01
CCDC28AQ8IWP9 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CCDC28AQ8IWP9 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC15□□□□□ -0.01
CCDC28AQ8IWP9 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CCDC28AQ8IWP9 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC15□□□□□ -0.01
CCDC28AQ8IWP9 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC15□□□□□ -0.01
CCDC28AQ8IWP9 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC15□□□□□ -0.01
CCDC28AQ8IWP9 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC15□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms