Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIMK1P53667 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIMK1P53667 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
LIMK1P53667 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
LIMK1P53667 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
LIMK1P53667 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIMK1P53667 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIMK1P53667 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIMK1P53667 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIMK1P53667 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC17.7■□□□□ 0.42
LIMK1P53667 COX20P2-201ENST00000452636 358 ntBASIC17.7■□□□□ 0.42
LIMK1P53667 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIMK1P53667 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC17.7■□□□□ 0.42
LIMK1P53667 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
LIMK1P53667 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC17.7■□□□□ 0.42
LIMK1P53667 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC17.7■□□□□ 0.42
LIMK1P53667 MTDHP4-201ENST00000600287 670 ntBASIC17.7■□□□□ 0.42
LIMK1P53667 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC17.7■□□□□ 0.42
LIMK1P53667 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIMK1P53667 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIMK1P53667 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
LIMK1P53667 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
LIMK1P53667 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC17.7■□□□□ 0.42
LIMK1P53667 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC17.7■□□□□ 0.42
LIMK1P53667 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC17.7■□□□□ 0.42
LIMK1P53667 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIMK1P53667 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
LIMK1P53667 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
LIMK1P53667 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIMK1P53667 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIMK1P53667 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LIMK1P53667 AP002414.3-201ENST00000589352 1468 ntBASIC17.69■□□□□ 0.42
LIMK1P53667 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC17.69■□□□□ 0.42
LIMK1P53667 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC17.69■□□□□ 0.42
LIMK1P53667 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC17.69■□□□□ 0.42
LIMK1P53667 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LIMK1P53667 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC17.69■□□□□ 0.42
LIMK1P53667 AC020916.1-201ENST00000587762 1774 ntBASIC17.69■□□□□ 0.42
LIMK1P53667 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LIMK1P53667 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LIMK1P53667 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC17.69■□□□□ 0.42
LIMK1P53667 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIMK1P53667 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIMK1P53667 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC17.69■□□□□ 0.42
LIMK1P53667 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
LIMK1P53667 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC17.69■□□□□ 0.42
LIMK1P53667 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIMK1P53667 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
LIMK1P53667 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC17.69■□□□□ 0.42
LIMK1P53667 MSRA-206ENST00000521209 814 ntTSL 3 BASIC17.69■□□□□ 0.42
LIMK1P53667 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC17.69■□□□□ 0.42
LIMK1P53667 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC17.69■□□□□ 0.42
LIMK1P53667 AP002472.1-201ENST00000577490 586 ntBASIC17.69■□□□□ 0.42
LIMK1P53667 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC17.69■□□□□ 0.42
LIMK1P53667 AC064836.3-201ENST00000607928 673 ntBASIC17.69■□□□□ 0.42
LIMK1P53667 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC17.69■□□□□ 0.42
LIMK1P53667 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC17.69■□□□□ 0.42
LIMK1P53667 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC17.69■□□□□ 0.42
LIMK1P53667 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC17.69■□□□□ 0.42
LIMK1P53667 PGM5P2-202ENST00000637225 1043 ntBASIC17.69■□□□□ 0.42
LIMK1P53667 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC17.69■□□□□ 0.42
LIMK1P53667 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIMK1P53667 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
LIMK1P53667 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LIMK1P53667 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIMK1P53667 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIMK1P53667 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LIMK1P53667 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIMK1P53667 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC17.69■□□□□ 0.42
LIMK1P53667 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIMK1P53667 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIMK1P53667 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIMK1P53667 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIMK1P53667 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC17.69■□□□□ 0.42
LIMK1P53667 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC17.68■□□□□ 0.42
LIMK1P53667 AL390961.4-201ENST00000623958 2535 ntBASIC17.68■□□□□ 0.42
LIMK1P53667 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LIMK1P53667 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LIMK1P53667 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC17.68■□□□□ 0.42
LIMK1P53667 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC17.68■□□□□ 0.42
LIMK1P53667 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LIMK1P53667 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LIMK1P53667 SOD2-201ENST00000337404 991 ntTSL 2 BASIC17.68■□□□□ 0.42
LIMK1P53667 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC17.68■□□□□ 0.42
LIMK1P53667 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LIMK1P53667 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC17.68■□□□□ 0.42
LIMK1P53667 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC17.68■□□□□ 0.42
LIMK1P53667 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC17.68■□□□□ 0.42
LIMK1P53667 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC17.68■□□□□ 0.42
LIMK1P53667 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC17.68■□□□□ 0.42
LIMK1P53667 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC17.68■□□□□ 0.42
LIMK1P53667 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC17.68■□□□□ 0.42
LIMK1P53667 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC17.68■□□□□ 0.42
LIMK1P53667 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LIMK1P53667 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC17.68■□□□□ 0.42
LIMK1P53667 AC104581.1-202ENST00000635932 2618 ntBASIC17.68■□□□□ 0.42
LIMK1P53667 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LIMK1P53667 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC17.68■□□□□ 0.42
LIMK1P53667 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC17.68■□□□□ 0.42
LIMK1P53667 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms