Protein–RNA interactions for Protein: P52945

PDX1, Pancreas/duodenum homeobox protein 1, humanhuman

Predictions only

Length 283 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDX1P52945 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PDX1P52945 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PDX1P52945 SDHAP2-201ENST00000455183 2001 ntBASIC17.42■□□□□ 0.38
PDX1P52945 AL024508.2-201ENST00000607749 1894 ntBASIC17.41■□□□□ 0.38
PDX1P52945 ADK-206ENST00000541550 2222 ntTSL 2 BASIC17.41■□□□□ 0.38
PDX1P52945 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC17.41■□□□□ 0.38
PDX1P52945 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PDX1P52945 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PDX1P52945 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PDX1P52945 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
PDX1P52945 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
PDX1P52945 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PDX1P52945 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC17.41■□□□□ 0.38
PDX1P52945 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC17.41■□□□□ 0.38
PDX1P52945 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PDX1P52945 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC17.41■□□□□ 0.38
PDX1P52945 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PDX1P52945 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC17.41■□□□□ 0.38
PDX1P52945 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PDX1P52945 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
PDX1P52945 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PDX1P52945 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PDX1P52945 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC17.41■□□□□ 0.38
PDX1P52945 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PDX1P52945 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC17.41■□□□□ 0.38
PDX1P52945 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PDX1P52945 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC17.41■□□□□ 0.38
PDX1P52945 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC17.41■□□□□ 0.38
PDX1P52945 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
PDX1P52945 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC17.41■□□□□ 0.38
PDX1P52945 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC17.41■□□□□ 0.38
PDX1P52945 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC17.41■□□□□ 0.38
PDX1P52945 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC17.41■□□□□ 0.38
PDX1P52945 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PDX1P52945 TP73-AS1-210ENST00000637775 1455 ntBASIC17.41■□□□□ 0.38
PDX1P52945 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PDX1P52945 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
PDX1P52945 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC17.41■□□□□ 0.38
PDX1P52945 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
PDX1P52945 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
PDX1P52945 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PDX1P52945 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC17.41■□□□□ 0.38
PDX1P52945 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PDX1P52945 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC17.4■□□□□ 0.38
PDX1P52945 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC17.4■□□□□ 0.38
PDX1P52945 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PDX1P52945 AL499627.1-201ENST00000569373 2188 ntBASIC17.4■□□□□ 0.38
PDX1P52945 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PDX1P52945 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PDX1P52945 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC17.4■□□□□ 0.38
PDX1P52945 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PDX1P52945 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
PDX1P52945 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PDX1P52945 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC17.4■□□□□ 0.38
PDX1P52945 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PDX1P52945 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PDX1P52945 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PDX1P52945 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PDX1P52945 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PDX1P52945 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PDX1P52945 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PDX1P52945 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC17.4■□□□□ 0.38
PDX1P52945 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC17.4■□□□□ 0.38
PDX1P52945 FGFR3P6-201ENST00000457012 610 ntBASIC17.4■□□□□ 0.38
PDX1P52945 AC068472.1-201ENST00000474589 881 ntBASIC17.4■□□□□ 0.38
PDX1P52945 AC126763.1-201ENST00000552015 2118 ntBASIC17.4■□□□□ 0.38
PDX1P52945 IRF8-202ENST00000562492 946 ntTSL 3 BASIC17.4■□□□□ 0.38
PDX1P52945 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC17.4■□□□□ 0.38
PDX1P52945 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
PDX1P52945 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC17.4■□□□□ 0.38
PDX1P52945 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PDX1P52945 AC139530.3-201ENST00000620344 690 ntBASIC17.4■□□□□ 0.38
PDX1P52945 AL355877.3-201ENST00000622820 899 ntBASIC17.4■□□□□ 0.38
PDX1P52945 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
PDX1P52945 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
PDX1P52945 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
PDX1P52945 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC17.4■□□□□ 0.38
PDX1P52945 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC17.4■□□□□ 0.38
PDX1P52945 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PDX1P52945 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC17.4■□□□□ 0.38
PDX1P52945 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PDX1P52945 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PDX1P52945 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
PDX1P52945 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
PDX1P52945 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
PDX1P52945 AC112777.1-201ENST00000540175 1423 ntBASIC17.39■□□□□ 0.38
PDX1P52945 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC17.39■□□□□ 0.37
PDX1P52945 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PDX1P52945 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC17.39■□□□□ 0.37
PDX1P52945 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PDX1P52945 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
PDX1P52945 ASL-204ENST00000395331 1538 ntTSL 5 BASIC17.39■□□□□ 0.37
PDX1P52945 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
PDX1P52945 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC17.39■□□□□ 0.37
PDX1P52945 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC17.39■□□□□ 0.37
PDX1P52945 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC17.39■□□□□ 0.37
PDX1P52945 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC17.39■□□□□ 0.37
PDX1P52945 AP001269.4-201ENST00000609611 512 ntBASIC17.39■□□□□ 0.37
PDX1P52945 AC117500.6-201ENST00000624871 588 ntBASIC17.39■□□□□ 0.37
PDX1P52945 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms