Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
CTCFP49711 AC009154.2-201ENST00000621177 724 ntBASIC20.7■□□□□ 0.9
CTCFP49711 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CTCFP49711 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CTCFP49711 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CTCFP49711 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CTCFP49711 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CTCFP49711 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
CTCFP49711 LBX2-AS1-202ENST00000603175 2083 ntBASIC20.69■□□□□ 0.9
CTCFP49711 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
CTCFP49711 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC20.69■□□□□ 0.9
CTCFP49711 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC20.69■□□□□ 0.9
CTCFP49711 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC20.69■□□□□ 0.9
CTCFP49711 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
CTCFP49711 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC20.69■□□□□ 0.9
CTCFP49711 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CTCFP49711 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CTCFP49711 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CTCFP49711 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CTCFP49711 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CTCFP49711 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
CTCFP49711 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC20.69■□□□□ 0.9
CTCFP49711 ARSEP1-201ENST00000420443 635 ntBASIC20.69■□□□□ 0.9
CTCFP49711 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC20.69■□□□□ 0.9
CTCFP49711 CRB3P1-201ENST00000449338 276 ntBASIC20.69■□□□□ 0.9
CTCFP49711 PRYP5-201ENST00000451909 266 ntBASIC20.69■□□□□ 0.9
CTCFP49711 UGT1A2P-201ENST00000454886 866 ntBASIC20.69■□□□□ 0.9
CTCFP49711 AC074386.1-202ENST00000463561 864 ntBASIC20.69■□□□□ 0.9
CTCFP49711 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC20.69■□□□□ 0.9
CTCFP49711 AC022145.2-201ENST00000598203 171 ntBASIC20.69■□□□□ 0.9
CTCFP49711 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CTCFP49711 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CTCFP49711 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CTCFP49711 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CTCFP49711 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CTCFP49711 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CTCFP49711 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CTCFP49711 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC20.69■□□□□ 0.9
CTCFP49711 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CTCFP49711 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
CTCFP49711 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC20.69■□□□□ 0.9
CTCFP49711 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
CTCFP49711 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
CTCFP49711 KRT8P32-201ENST00000512863 1461 ntBASIC20.69■□□□□ 0.9
CTCFP49711 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CTCFP49711 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC20.68■□□□□ 0.9
CTCFP49711 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CTCFP49711 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CTCFP49711 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC20.68■□□□□ 0.9
CTCFP49711 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CTCFP49711 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CTCFP49711 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
CTCFP49711 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CTCFP49711 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CTCFP49711 NABP1-203ENST00000409510 843 ntTSL 5 BASIC20.68■□□□□ 0.9
CTCFP49711 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CTCFP49711 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CTCFP49711 PARP8-218ENST00000513738 596 ntTSL 4 BASIC20.68■□□□□ 0.9
CTCFP49711 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC20.68■□□□□ 0.9
CTCFP49711 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CTCFP49711 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CTCFP49711 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC20.68■□□□□ 0.9
CTCFP49711 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CTCFP49711 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CTCFP49711 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CTCFP49711 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CTCFP49711 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC20.68■□□□□ 0.9
CTCFP49711 AC125437.2-201ENST00000625180 2167 ntBASIC20.68■□□□□ 0.9
CTCFP49711 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CTCFP49711 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CTCFP49711 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC20.67■□□□□ 0.9
CTCFP49711 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
CTCFP49711 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CTCFP49711 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC20.67■□□□□ 0.9
CTCFP49711 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CTCFP49711 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CTCFP49711 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CTCFP49711 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CTCFP49711 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CTCFP49711 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
CTCFP49711 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
CTCFP49711 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC20.67■□□□□ 0.9
CTCFP49711 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC20.67■□□□□ 0.9
CTCFP49711 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC20.67■□□□□ 0.9
CTCFP49711 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
CTCFP49711 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CTCFP49711 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC20.67■□□□□ 0.9
CTCFP49711 AC092902.6-201ENST00000641783 218 ntBASIC20.67■□□□□ 0.9
CTCFP49711 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
CTCFP49711 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CTCFP49711 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC20.67■□□□□ 0.9
CTCFP49711 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CTCFP49711 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC20.66■□□□□ 0.9
CTCFP49711 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CTCFP49711 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CTCFP49711 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CTCFP49711 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
CTCFP49711 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CTCFP49711 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CTCFP49711 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 63.4 ms