Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
RFX3P48380 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
RFX3P48380 FER1L4-210ENST00000615531 5998 ntBASIC16.89■□□□□ 0.3
RFX3P48380 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
RFX3P48380 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
RFX3P48380 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC16.89■□□□□ 0.29
RFX3P48380 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC16.89■□□□□ 0.29
RFX3P48380 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
RFX3P48380 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RFX3P48380 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
RFX3P48380 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
RFX3P48380 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
RFX3P48380 RNF152P1-201ENST00000397754 604 ntBASIC16.89■□□□□ 0.29
RFX3P48380 SPDYE15P-201ENST00000424157 909 ntBASIC16.89■□□□□ 0.29
RFX3P48380 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC16.89■□□□□ 0.29
RFX3P48380 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RFX3P48380 REEP1-209ENST00000541910 969 ntTSL 2 BASIC16.89■□□□□ 0.29
RFX3P48380 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC16.89■□□□□ 0.29
RFX3P48380 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC16.89■□□□□ 0.29
RFX3P48380 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
RFX3P48380 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC16.89■□□□□ 0.29
RFX3P48380 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC16.89■□□□□ 0.29
RFX3P48380 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
RFX3P48380 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC16.89■□□□□ 0.29
RFX3P48380 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC16.89■□□□□ 0.29
RFX3P48380 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RFX3P48380 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RFX3P48380 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
RFX3P48380 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RFX3P48380 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RFX3P48380 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
RFX3P48380 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RFX3P48380 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RFX3P48380 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
RFX3P48380 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
RFX3P48380 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
RFX3P48380 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
RFX3P48380 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RFX3P48380 POR-209ENST00000439269 1858 ntTSL 2 BASIC16.88■□□□□ 0.29
RFX3P48380 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RFX3P48380 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
RFX3P48380 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RFX3P48380 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC16.88■□□□□ 0.29
RFX3P48380 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RFX3P48380 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
RFX3P48380 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC16.88■□□□□ 0.29
RFX3P48380 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
RFX3P48380 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
RFX3P48380 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RFX3P48380 TSPY5P-201ENST00000426936 936 ntBASIC16.88■□□□□ 0.29
RFX3P48380 AC104076.2-201ENST00000448912 469 ntBASIC16.88■□□□□ 0.29
RFX3P48380 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RFX3P48380 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC16.88■□□□□ 0.29
RFX3P48380 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC16.88■□□□□ 0.29
RFX3P48380 RBM42-202ENST00000586618 771 ntTSL 3 BASIC16.88■□□□□ 0.29
RFX3P48380 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
RFX3P48380 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RFX3P48380 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
RFX3P48380 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC16.88■□□□□ 0.29
RFX3P48380 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RFX3P48380 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RFX3P48380 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC16.88■□□□□ 0.29
RFX3P48380 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RFX3P48380 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC16.88■□□□□ 0.29
RFX3P48380 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
RFX3P48380 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
RFX3P48380 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
RFX3P48380 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
RFX3P48380 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
RFX3P48380 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
RFX3P48380 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
RFX3P48380 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
RFX3P48380 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
RFX3P48380 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
RFX3P48380 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
RFX3P48380 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
RFX3P48380 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC16.87■□□□□ 0.29
RFX3P48380 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
RFX3P48380 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
RFX3P48380 AL024508.2-201ENST00000607749 1894 ntBASIC16.87■□□□□ 0.29
RFX3P48380 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
RFX3P48380 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
RFX3P48380 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
RFX3P48380 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC16.87■□□□□ 0.29
RFX3P48380 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
RFX3P48380 SNX5-210ENST00000481323 562 ntTSL 3 BASIC16.87■□□□□ 0.29
RFX3P48380 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC16.87■□□□□ 0.29
RFX3P48380 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC16.87■□□□□ 0.29
RFX3P48380 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
RFX3P48380 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
RFX3P48380 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
RFX3P48380 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC16.87■□□□□ 0.29
RFX3P48380 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
RFX3P48380 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
RFX3P48380 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
RFX3P48380 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
RFX3P48380 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
RFX3P48380 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC16.86■□□□□ 0.29
RFX3P48380 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
RFX3P48380 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms