Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC14.72□□□□□ -0.05
NKX2-1P43699 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC14.72□□□□□ -0.05
NKX2-1P43699 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
NKX2-1P43699 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC14.72□□□□□ -0.05
NKX2-1P43699 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC14.72□□□□□ -0.05
NKX2-1P43699 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC14.72□□□□□ -0.05
NKX2-1P43699 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC14.72□□□□□ -0.05
NKX2-1P43699 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC14.72□□□□□ -0.05
NKX2-1P43699 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
NKX2-1P43699 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC14.72□□□□□ -0.05
NKX2-1P43699 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
NKX2-1P43699 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
NKX2-1P43699 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
NKX2-1P43699 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
NKX2-1P43699 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC14.71□□□□□ -0.05
NKX2-1P43699 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
NKX2-1P43699 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
NKX2-1P43699 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
NKX2-1P43699 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
NKX2-1P43699 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
NKX2-1P43699 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
NKX2-1P43699 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC14.71□□□□□ -0.05
NKX2-1P43699 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC14.71□□□□□ -0.05
NKX2-1P43699 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
NKX2-1P43699 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC14.71□□□□□ -0.05
NKX2-1P43699 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC14.71□□□□□ -0.05
NKX2-1P43699 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC14.71□□□□□ -0.05
NKX2-1P43699 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
NKX2-1P43699 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
NKX2-1P43699 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
NKX2-1P43699 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
NKX2-1P43699 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC14.71□□□□□ -0.05
NKX2-1P43699 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC14.71□□□□□ -0.05
NKX2-1P43699 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC14.71□□□□□ -0.05
NKX2-1P43699 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC14.71□□□□□ -0.05
NKX2-1P43699 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC14.71□□□□□ -0.05
NKX2-1P43699 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
NKX2-1P43699 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
NKX2-1P43699 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
NKX2-1P43699 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
NKX2-1P43699 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC14.71□□□□□ -0.05
NKX2-1P43699 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC14.71□□□□□ -0.05
NKX2-1P43699 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC14.71□□□□□ -0.05
NKX2-1P43699 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
NKX2-1P43699 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.06
NKX2-1P43699 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
NKX2-1P43699 AL163051.1-201ENST00000569214 1512 ntBASIC14.71□□□□□ -0.06
NKX2-1P43699 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC14.71□□□□□ -0.06
NKX2-1P43699 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC14.71□□□□□ -0.06
NKX2-1P43699 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
NKX2-1P43699 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
NKX2-1P43699 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
NKX2-1P43699 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
NKX2-1P43699 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
NKX2-1P43699 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
NKX2-1P43699 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC14.7□□□□□ -0.06
NKX2-1P43699 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
NKX2-1P43699 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC14.7□□□□□ -0.06
NKX2-1P43699 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
NKX2-1P43699 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
NKX2-1P43699 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
NKX2-1P43699 UROS-202ENST00000368778 1556 ntTSL 2 BASIC14.7□□□□□ -0.06
NKX2-1P43699 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
NKX2-1P43699 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
NKX2-1P43699 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
NKX2-1P43699 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
NKX2-1P43699 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC14.7□□□□□ -0.06
NKX2-1P43699 NIFKP9-201ENST00000419265 221 ntBASIC14.7□□□□□ -0.06
NKX2-1P43699 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC14.7□□□□□ -0.06
NKX2-1P43699 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
NKX2-1P43699 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC14.7□□□□□ -0.06
NKX2-1P43699 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
NKX2-1P43699 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC14.7□□□□□ -0.06
NKX2-1P43699 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
NKX2-1P43699 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
NKX2-1P43699 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
NKX2-1P43699 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
NKX2-1P43699 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
NKX2-1P43699 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
NKX2-1P43699 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
NKX2-1P43699 AC008894.3-201ENST00000624324 3103 ntBASIC14.7□□□□□ -0.06
NKX2-1P43699 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
NKX2-1P43699 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC14.7□□□□□ -0.06
NKX2-1P43699 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
NKX2-1P43699 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
NKX2-1P43699 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
NKX2-1P43699 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC14.69□□□□□ -0.06
NKX2-1P43699 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC14.69□□□□□ -0.06
NKX2-1P43699 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC14.69□□□□□ -0.06
NKX2-1P43699 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
NKX2-1P43699 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
NKX2-1P43699 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC14.69□□□□□ -0.06
NKX2-1P43699 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
NKX2-1P43699 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
NKX2-1P43699 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
NKX2-1P43699 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
NKX2-1P43699 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
NKX2-1P43699 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
NKX2-1P43699 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
NKX2-1P43699 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms