Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
HNF4AP41235 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
HNF4AP41235 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HNF4AP41235 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
HNF4AP41235 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
HNF4AP41235 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
HNF4AP41235 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC17.42■□□□□ 0.38
HNF4AP41235 LINC00167-201ENST00000530583 1419 ntBASIC17.42■□□□□ 0.38
HNF4AP41235 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC17.42■□□□□ 0.38
HNF4AP41235 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HNF4AP41235 GUK1-204ENST00000366721 689 ntTSL 3 BASIC17.42■□□□□ 0.38
HNF4AP41235 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HNF4AP41235 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HNF4AP41235 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC17.42■□□□□ 0.38
HNF4AP41235 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
HNF4AP41235 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC17.42■□□□□ 0.38
HNF4AP41235 FGF14-AS2-201ENST00000606448 1074 ntBASIC17.42■□□□□ 0.38
HNF4AP41235 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
HNF4AP41235 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC17.42■□□□□ 0.38
HNF4AP41235 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HNF4AP41235 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HNF4AP41235 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC17.42■□□□□ 0.38
HNF4AP41235 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC17.42■□□□□ 0.38
HNF4AP41235 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HNF4AP41235 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
HNF4AP41235 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HNF4AP41235 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC17.42■□□□□ 0.38
HNF4AP41235 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
HNF4AP41235 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HNF4AP41235 AC134043.2-201ENST00000624206 2238 ntBASIC17.41■□□□□ 0.38
HNF4AP41235 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
HNF4AP41235 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
HNF4AP41235 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HNF4AP41235 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HNF4AP41235 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HNF4AP41235 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HNF4AP41235 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HNF4AP41235 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HNF4AP41235 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
HNF4AP41235 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
HNF4AP41235 LINC01311-201ENST00000565162 1445 ntBASIC17.41■□□□□ 0.38
HNF4AP41235 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
HNF4AP41235 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
HNF4AP41235 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC17.41■□□□□ 0.38
HNF4AP41235 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
HNF4AP41235 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
HNF4AP41235 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HNF4AP41235 FAM8A6P-201ENST00000407496 1135 ntBASIC17.41■□□□□ 0.38
HNF4AP41235 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC17.41■□□□□ 0.38
HNF4AP41235 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC17.41■□□□□ 0.38
HNF4AP41235 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC17.41■□□□□ 0.38
HNF4AP41235 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC17.41■□□□□ 0.38
HNF4AP41235 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC17.41■□□□□ 0.38
HNF4AP41235 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC17.41■□□□□ 0.38
HNF4AP41235 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC17.41■□□□□ 0.38
HNF4AP41235 DFFB-212ENST00000625756 649 ntTSL 5 BASIC17.41■□□□□ 0.38
HNF4AP41235 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HNF4AP41235 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HNF4AP41235 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
HNF4AP41235 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HNF4AP41235 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC17.41■□□□□ 0.38
HNF4AP41235 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
HNF4AP41235 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
HNF4AP41235 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC17.41■□□□□ 0.38
HNF4AP41235 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HNF4AP41235 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC17.41■□□□□ 0.38
HNF4AP41235 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
HNF4AP41235 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC17.41■□□□□ 0.38
HNF4AP41235 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
HNF4AP41235 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HNF4AP41235 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC17.41■□□□□ 0.38
HNF4AP41235 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC17.41■□□□□ 0.38
HNF4AP41235 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HNF4AP41235 NARF-204ENST00000390006 1766 ntTSL 2 BASIC17.4■□□□□ 0.38
HNF4AP41235 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HNF4AP41235 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HNF4AP41235 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HNF4AP41235 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HNF4AP41235 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC17.4■□□□□ 0.38
HNF4AP41235 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HNF4AP41235 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HNF4AP41235 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HNF4AP41235 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
HNF4AP41235 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HNF4AP41235 AC067852.2-201ENST00000590513 2313 ntBASIC17.4■□□□□ 0.38
HNF4AP41235 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HNF4AP41235 HES2-202ENST00000377836 507 ntTSL 2 BASIC17.4■□□□□ 0.38
HNF4AP41235 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC17.4■□□□□ 0.38
HNF4AP41235 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC17.4■□□□□ 0.38
HNF4AP41235 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
HNF4AP41235 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC17.4■□□□□ 0.38
HNF4AP41235 AL671277.2-201ENST00000458060 996 ntBASIC17.4■□□□□ 0.38
HNF4AP41235 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC17.4■□□□□ 0.38
HNF4AP41235 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HNF4AP41235 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HNF4AP41235 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC17.4■□□□□ 0.38
HNF4AP41235 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
HNF4AP41235 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC17.4■□□□□ 0.38
HNF4AP41235 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC17.4■□□□□ 0.38
HNF4AP41235 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms