Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC16.42■□□□□ 0.22
RFC3P40938 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
RFC3P40938 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
RFC3P40938 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
RFC3P40938 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
RFC3P40938 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC16.42■□□□□ 0.22
RFC3P40938 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
RFC3P40938 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
RFC3P40938 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
RFC3P40938 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
RFC3P40938 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC16.41■□□□□ 0.22
RFC3P40938 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
RFC3P40938 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
RFC3P40938 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC16.41■□□□□ 0.22
RFC3P40938 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RFC3P40938 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RFC3P40938 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
RFC3P40938 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
RFC3P40938 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
RFC3P40938 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
RFC3P40938 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC16.41■□□□□ 0.22
RFC3P40938 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RFC3P40938 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC16.41■□□□□ 0.22
RFC3P40938 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC16.41■□□□□ 0.22
RFC3P40938 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RFC3P40938 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC16.41■□□□□ 0.22
RFC3P40938 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC16.41■□□□□ 0.22
RFC3P40938 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
RFC3P40938 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
RFC3P40938 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC16.41■□□□□ 0.22
RFC3P40938 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC16.41■□□□□ 0.22
RFC3P40938 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
RFC3P40938 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
RFC3P40938 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC16.41■□□□□ 0.22
RFC3P40938 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RFC3P40938 AC104692.2-201ENST00000603054 253 ntBASIC16.41■□□□□ 0.22
RFC3P40938 GXYLT1P4-201ENST00000613576 1192 ntBASIC16.41■□□□□ 0.22
RFC3P40938 ANKRD20A8P-203ENST00000641373 517 ntBASIC16.41■□□□□ 0.22
RFC3P40938 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC16.41■□□□□ 0.22
RFC3P40938 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
RFC3P40938 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RFC3P40938 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
RFC3P40938 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RFC3P40938 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RFC3P40938 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
RFC3P40938 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
RFC3P40938 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC16.41■□□□□ 0.22
RFC3P40938 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
RFC3P40938 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RFC3P40938 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RFC3P40938 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC16.41■□□□□ 0.22
RFC3P40938 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RFC3P40938 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RFC3P40938 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RFC3P40938 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC16.4■□□□□ 0.22
RFC3P40938 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
RFC3P40938 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
RFC3P40938 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
RFC3P40938 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
RFC3P40938 THAP5-204ENST00000438865 868 ntTSL 2 BASIC16.4■□□□□ 0.22
RFC3P40938 MTCL1P1-201ENST00000446207 792 ntBASIC16.4■□□□□ 0.22
RFC3P40938 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC16.4■□□□□ 0.22
RFC3P40938 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC16.4■□□□□ 0.22
RFC3P40938 AC079776.4-201ENST00000511039 504 ntBASIC16.4■□□□□ 0.22
RFC3P40938 IGHV3OR16-7-201ENST00000604106 360 ntBASIC16.4■□□□□ 0.22
RFC3P40938 AL591684.3-201ENST00000605187 298 ntBASIC16.4■□□□□ 0.22
RFC3P40938 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
RFC3P40938 AC009154.2-201ENST00000621177 724 ntBASIC16.4■□□□□ 0.22
RFC3P40938 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC16.4■□□□□ 0.22
RFC3P40938 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC16.4■□□□□ 0.22
RFC3P40938 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
RFC3P40938 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RFC3P40938 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RFC3P40938 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RFC3P40938 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC16.4■□□□□ 0.22
RFC3P40938 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC16.4■□□□□ 0.22
RFC3P40938 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
RFC3P40938 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC16.4■□□□□ 0.22
RFC3P40938 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RFC3P40938 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RFC3P40938 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
RFC3P40938 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
RFC3P40938 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC16.4■□□□□ 0.22
RFC3P40938 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
RFC3P40938 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC16.4■□□□□ 0.22
RFC3P40938 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RFC3P40938 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
RFC3P40938 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
RFC3P40938 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC16.39■□□□□ 0.21
RFC3P40938 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RFC3P40938 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RFC3P40938 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RFC3P40938 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RFC3P40938 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC16.39■□□□□ 0.21
RFC3P40938 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
RFC3P40938 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC16.39■□□□□ 0.21
RFC3P40938 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RFC3P40938 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC16.39■□□□□ 0.21
RFC3P40938 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC16.39■□□□□ 0.21
RFC3P40938 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms