Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
HMGB1P09429 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC21.17■□□□□ 0.98
HMGB1P09429 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
HMGB1P09429 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC21.17■□□□□ 0.98
HMGB1P09429 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC21.17■□□□□ 0.98
HMGB1P09429 FAM210CP-201ENST00000445714 574 ntBASIC21.17■□□□□ 0.98
HMGB1P09429 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC21.17■□□□□ 0.98
HMGB1P09429 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC21.17■□□□□ 0.98
HMGB1P09429 AL136038.3-201ENST00000561909 1096 ntBASIC21.17■□□□□ 0.98
HMGB1P09429 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC21.17■□□□□ 0.98
HMGB1P09429 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
HMGB1P09429 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
HMGB1P09429 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
HMGB1P09429 KRT8P47-201ENST00000604727 1398 ntBASIC21.17■□□□□ 0.98
HMGB1P09429 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
HMGB1P09429 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC21.17■□□□□ 0.98
HMGB1P09429 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC21.17■□□□□ 0.98
HMGB1P09429 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC21.17■□□□□ 0.98
HMGB1P09429 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
HMGB1P09429 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
HMGB1P09429 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
HMGB1P09429 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
HMGB1P09429 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC21.16■□□□□ 0.98
HMGB1P09429 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC21.16■□□□□ 0.98
HMGB1P09429 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HMGB1P09429 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC21.16■□□□□ 0.98
HMGB1P09429 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
HMGB1P09429 MED29-202ENST00000594368 1471 ntTSL 2 BASIC21.16■□□□□ 0.98
HMGB1P09429 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
HMGB1P09429 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
HMGB1P09429 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
HMGB1P09429 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC21.16■□□□□ 0.98
HMGB1P09429 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC21.16■□□□□ 0.98
HMGB1P09429 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
HMGB1P09429 AC068472.1-201ENST00000474589 881 ntBASIC21.16■□□□□ 0.98
HMGB1P09429 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC21.16■□□□□ 0.98
HMGB1P09429 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC21.16■□□□□ 0.98
HMGB1P09429 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC21.16■□□□□ 0.98
HMGB1P09429 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC21.16■□□□□ 0.98
HMGB1P09429 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC21.16■□□□□ 0.98
HMGB1P09429 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
HMGB1P09429 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
HMGB1P09429 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
HMGB1P09429 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
HMGB1P09429 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC21.16■□□□□ 0.98
HMGB1P09429 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC21.16■□□□□ 0.98
HMGB1P09429 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
HMGB1P09429 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
HMGB1P09429 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
HMGB1P09429 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
HMGB1P09429 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC21.15■□□□□ 0.98
HMGB1P09429 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC21.15■□□□□ 0.98
HMGB1P09429 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
HMGB1P09429 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HMGB1P09429 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HMGB1P09429 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
HMGB1P09429 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
HMGB1P09429 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC21.15■□□□□ 0.98
HMGB1P09429 MTCL1P1-201ENST00000446207 792 ntBASIC21.15■□□□□ 0.98
HMGB1P09429 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
HMGB1P09429 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
HMGB1P09429 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC21.15■□□□□ 0.98
HMGB1P09429 NME3-204ENST00000563498 920 ntTSL 2 BASIC21.15■□□□□ 0.98
HMGB1P09429 AL049597.2-201ENST00000565575 961 ntBASIC21.15■□□□□ 0.98
HMGB1P09429 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC21.15■□□□□ 0.98
HMGB1P09429 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC21.15■□□□□ 0.98
HMGB1P09429 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
HMGB1P09429 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
HMGB1P09429 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HMGB1P09429 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HMGB1P09429 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HMGB1P09429 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
HMGB1P09429 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
HMGB1P09429 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
HMGB1P09429 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
HMGB1P09429 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
HMGB1P09429 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.98
HMGB1P09429 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC21.14■□□□□ 0.98
HMGB1P09429 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
HMGB1P09429 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
HMGB1P09429 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
HMGB1P09429 AC009949.1-201ENST00000623048 1830 ntBASIC21.14■□□□□ 0.97
HMGB1P09429 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC21.14■□□□□ 0.97
HMGB1P09429 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC21.14■□□□□ 0.97
HMGB1P09429 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC21.14■□□□□ 0.97
HMGB1P09429 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC21.14■□□□□ 0.97
HMGB1P09429 LETM1P2-201ENST00000597330 2178 ntBASIC21.14■□□□□ 0.97
HMGB1P09429 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
HMGB1P09429 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
HMGB1P09429 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC21.14■□□□□ 0.97
HMGB1P09429 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.97
HMGB1P09429 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
HMGB1P09429 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC21.14■□□□□ 0.97
HMGB1P09429 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
HMGB1P09429 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
HMGB1P09429 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HMGB1P09429 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC21.13■□□□□ 0.97
HMGB1P09429 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
HMGB1P09429 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
HMGB1P09429 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms