Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
COL2A1P02458 HARS-201ENST00000307633 1780 ntTSL 2 BASIC20.82■□□□□ 0.92
COL2A1P02458 EFTUD1P1-204ENST00000560401 1798 ntBASIC20.82■□□□□ 0.92
COL2A1P02458 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL2A1P02458 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL2A1P02458 AC135776.1-201ENST00000319817 2481 ntBASIC20.82■□□□□ 0.92
COL2A1P02458 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
COL2A1P02458 AC009336.1-201ENST00000608941 1553 ntBASIC20.82■□□□□ 0.92
COL2A1P02458 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL2A1P02458 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL2A1P02458 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL2A1P02458 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC20.82■□□□□ 0.92
COL2A1P02458 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL2A1P02458 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
COL2A1P02458 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL2A1P02458 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL2A1P02458 UPF3AP3-201ENST00000420996 769 ntBASIC20.81■□□□□ 0.92
COL2A1P02458 SIGLEC30P-201ENST00000455569 941 ntBASIC20.81■□□□□ 0.92
COL2A1P02458 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL2A1P02458 AC109462.3-201ENST00000573934 613 ntBASIC20.81■□□□□ 0.92
COL2A1P02458 AC064836.3-201ENST00000607928 673 ntBASIC20.81■□□□□ 0.92
COL2A1P02458 HOTTIP_1.1-201ENST00000620415 57 ntBASIC20.81■□□□□ 0.92
COL2A1P02458 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL2A1P02458 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL2A1P02458 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL2A1P02458 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL2A1P02458 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
COL2A1P02458 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC20.81■□□□□ 0.92
COL2A1P02458 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
COL2A1P02458 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC20.81■□□□□ 0.92
COL2A1P02458 AC006504.4-201ENST00000592118 1568 ntBASIC20.81■□□□□ 0.92
COL2A1P02458 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC20.81■□□□□ 0.92
COL2A1P02458 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL2A1P02458 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL2A1P02458 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC20.81■□□□□ 0.92
COL2A1P02458 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
COL2A1P02458 AP000974.1-201ENST00000623909 2387 ntBASIC20.81■□□□□ 0.92
COL2A1P02458 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC20.81■□□□□ 0.92
COL2A1P02458 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC20.81■□□□□ 0.92
COL2A1P02458 RPSAP43-201ENST00000402237 625 ntBASIC20.81■□□□□ 0.92
COL2A1P02458 AC108073.2-201ENST00000464002 357 ntBASIC20.81■□□□□ 0.92
COL2A1P02458 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC20.81■□□□□ 0.92
COL2A1P02458 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC20.81■□□□□ 0.92
COL2A1P02458 AC002347.1-201ENST00000569543 541 ntBASIC20.81■□□□□ 0.92
COL2A1P02458 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC20.81■□□□□ 0.92
COL2A1P02458 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
COL2A1P02458 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC20.81■□□□□ 0.92
COL2A1P02458 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL2A1P02458 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL2A1P02458 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC20.81■□□□□ 0.92
COL2A1P02458 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
COL2A1P02458 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC20.8■□□□□ 0.92
COL2A1P02458 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC20.8■□□□□ 0.92
COL2A1P02458 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL2A1P02458 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
COL2A1P02458 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC20.8■□□□□ 0.92
COL2A1P02458 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC20.8■□□□□ 0.92
COL2A1P02458 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC20.8■□□□□ 0.92
COL2A1P02458 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC20.8■□□□□ 0.92
COL2A1P02458 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL2A1P02458 DNAJB3-201ENST00000446806 729 ntBASIC20.8■□□□□ 0.92
COL2A1P02458 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC20.8■□□□□ 0.92
COL2A1P02458 AC010327.4-202ENST00000591484 748 ntBASIC20.8■□□□□ 0.92
COL2A1P02458 AC008667.4-201ENST00000607370 168 ntBASIC20.8■□□□□ 0.92
COL2A1P02458 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL2A1P02458 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL2A1P02458 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL2A1P02458 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC20.79■□□□□ 0.92
COL2A1P02458 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
COL2A1P02458 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
COL2A1P02458 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL2A1P02458 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL2A1P02458 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL2A1P02458 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
COL2A1P02458 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC20.79■□□□□ 0.92
COL2A1P02458 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL2A1P02458 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC20.79■□□□□ 0.92
COL2A1P02458 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
COL2A1P02458 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC20.79■□□□□ 0.92
COL2A1P02458 PMP22-202ENST00000395936 816 ntTSL 3 BASIC20.79■□□□□ 0.92
COL2A1P02458 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
COL2A1P02458 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
COL2A1P02458 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC20.79■□□□□ 0.92
COL2A1P02458 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
COL2A1P02458 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL2A1P02458 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
COL2A1P02458 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL2A1P02458 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC20.79■□□□□ 0.92
COL2A1P02458 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
COL2A1P02458 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
COL2A1P02458 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
COL2A1P02458 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL2A1P02458 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL2A1P02458 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
COL2A1P02458 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
COL2A1P02458 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
COL2A1P02458 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL2A1P02458 IGHV3-65-201ENST00000523210 341 ntBASIC20.78■□□□□ 0.92
COL2A1P02458 RIN3-211ENST00000557762 517 ntTSL 3 BASIC20.78■□□□□ 0.92
COL2A1P02458 TCAP-202ENST00000578283 583 ntTSL 5 BASIC20.78■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms