Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
RTN3O95197 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RTN3O95197 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC18.88■□□□□ 0.61
RTN3O95197 TPM1-218ENST00000559281 851 ntTSL 5 BASIC18.88■□□□□ 0.61
RTN3O95197 AC005336.2-201ENST00000593183 939 ntBASIC18.88■□□□□ 0.61
RTN3O95197 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC18.88■□□□□ 0.61
RTN3O95197 AC104581.1-202ENST00000635932 2618 ntBASIC18.88■□□□□ 0.61
RTN3O95197 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RTN3O95197 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
RTN3O95197 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RTN3O95197 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
RTN3O95197 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC18.88■□□□□ 0.61
RTN3O95197 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC18.88■□□□□ 0.61
RTN3O95197 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC18.88■□□□□ 0.61
RTN3O95197 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RTN3O95197 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
RTN3O95197 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RTN3O95197 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RTN3O95197 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
RTN3O95197 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
RTN3O95197 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
RTN3O95197 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC18.88■□□□□ 0.61
RTN3O95197 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RTN3O95197 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RTN3O95197 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RTN3O95197 AC099398.1-201ENST00000567919 2776 ntBASIC18.87■□□□□ 0.61
RTN3O95197 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC18.87■□□□□ 0.61
RTN3O95197 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC18.87■□□□□ 0.61
RTN3O95197 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RTN3O95197 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RTN3O95197 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
RTN3O95197 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RTN3O95197 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RTN3O95197 AC004870.1-201ENST00000315132 882 ntBASIC18.87■□□□□ 0.61
RTN3O95197 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC18.87■□□□□ 0.61
RTN3O95197 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
RTN3O95197 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
RTN3O95197 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
RTN3O95197 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC18.87■□□□□ 0.61
RTN3O95197 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
RTN3O95197 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC18.87■□□□□ 0.61
RTN3O95197 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC18.87■□□□□ 0.61
RTN3O95197 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
RTN3O95197 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
RTN3O95197 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RTN3O95197 NUS1P2-201ENST00000417358 873 ntBASIC18.87■□□□□ 0.61
RTN3O95197 DANCR-204ENST00000444958 709 ntTSL 3 BASIC18.87■□□□□ 0.61
RTN3O95197 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC18.87■□□□□ 0.61
RTN3O95197 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
RTN3O95197 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
RTN3O95197 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC18.87■□□□□ 0.61
RTN3O95197 RN7SL510P-201ENST00000581311 263 ntBASIC18.87■□□□□ 0.61
RTN3O95197 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
RTN3O95197 AC012313.1-201ENST00000593393 3059 ntBASIC18.87■□□□□ 0.61
RTN3O95197 BNIP3P18-201ENST00000593976 575 ntBASIC18.87■□□□□ 0.61
RTN3O95197 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RTN3O95197 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
RTN3O95197 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
RTN3O95197 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RTN3O95197 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
RTN3O95197 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RTN3O95197 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
RTN3O95197 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
RTN3O95197 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
RTN3O95197 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
RTN3O95197 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC18.86■□□□□ 0.61
RTN3O95197 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC18.86■□□□□ 0.61
RTN3O95197 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
RTN3O95197 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC18.86■□□□□ 0.61
RTN3O95197 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
RTN3O95197 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
RTN3O95197 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC18.86■□□□□ 0.61
RTN3O95197 AC022898.2-201ENST00000616822 1312 ntBASIC18.86■□□□□ 0.61
RTN3O95197 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
RTN3O95197 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC18.86■□□□□ 0.61
RTN3O95197 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RTN3O95197 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
RTN3O95197 UNC93B7-201ENST00000509439 705 ntBASIC18.86■□□□□ 0.61
RTN3O95197 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC18.86■□□□□ 0.61
RTN3O95197 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC18.86■□□□□ 0.61
RTN3O95197 AC009533.2-201ENST00000543664 586 ntBASIC18.86■□□□□ 0.61
RTN3O95197 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC18.86■□□□□ 0.61
RTN3O95197 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
RTN3O95197 AL121894.2-201ENST00000602977 491 ntBASIC18.86■□□□□ 0.61
RTN3O95197 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC18.86■□□□□ 0.61
RTN3O95197 BCL2-203ENST00000589955 5011 ntBASIC18.86■□□□□ 0.61
RTN3O95197 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RTN3O95197 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
RTN3O95197 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RTN3O95197 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC18.86■□□□□ 0.61
RTN3O95197 AC139713.2-201ENST00000641328 2723 ntBASIC18.86■□□□□ 0.61
RTN3O95197 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC18.86■□□□□ 0.61
RTN3O95197 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
RTN3O95197 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RTN3O95197 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
RTN3O95197 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RTN3O95197 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
RTN3O95197 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
RTN3O95197 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RTN3O95197 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms