Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC17.21■□□□□ 0.35
SEMA3DO95025 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
SEMA3DO95025 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
SEMA3DO95025 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SEMA3DO95025 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SEMA3DO95025 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SEMA3DO95025 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC17.21■□□□□ 0.35
SEMA3DO95025 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SEMA3DO95025 KRT18P65-201ENST00000439811 1286 ntBASIC17.21■□□□□ 0.35
SEMA3DO95025 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC17.21■□□□□ 0.35
SEMA3DO95025 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC17.21■□□□□ 0.35
SEMA3DO95025 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SEMA3DO95025 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC17.21■□□□□ 0.35
SEMA3DO95025 FGF14-AS2-201ENST00000606448 1074 ntBASIC17.21■□□□□ 0.35
SEMA3DO95025 LITAF-220ENST00000620789 692 ntTSL 5 BASIC17.21■□□□□ 0.35
SEMA3DO95025 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC17.21■□□□□ 0.35
SEMA3DO95025 PXK-206ENST00000463280 2825 ntTSL 2 BASIC17.21■□□□□ 0.35
SEMA3DO95025 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
SEMA3DO95025 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SEMA3DO95025 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
SEMA3DO95025 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SEMA3DO95025 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC17.21■□□□□ 0.35
SEMA3DO95025 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SEMA3DO95025 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
SEMA3DO95025 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
SEMA3DO95025 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC17.21■□□□□ 0.34
SEMA3DO95025 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
SEMA3DO95025 LINC00602-201ENST00000629776 2065 ntBASIC17.2■□□□□ 0.34
SEMA3DO95025 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SEMA3DO95025 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SEMA3DO95025 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
SEMA3DO95025 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC17.2■□□□□ 0.34
SEMA3DO95025 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SEMA3DO95025 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC17.2■□□□□ 0.34
SEMA3DO95025 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC17.2■□□□□ 0.34
SEMA3DO95025 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SEMA3DO95025 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC17.2■□□□□ 0.34
SEMA3DO95025 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SEMA3DO95025 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC17.2■□□□□ 0.34
SEMA3DO95025 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SEMA3DO95025 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SEMA3DO95025 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SEMA3DO95025 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC17.2■□□□□ 0.34
SEMA3DO95025 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SEMA3DO95025 KRT18P38-201ENST00000449496 1282 ntBASIC17.2■□□□□ 0.34
SEMA3DO95025 AC092647.4-201ENST00000457211 535 ntBASIC17.2■□□□□ 0.34
SEMA3DO95025 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC17.2■□□□□ 0.34
SEMA3DO95025 LTBR-211ENST00000543190 785 ntTSL 3 BASIC17.2■□□□□ 0.34
SEMA3DO95025 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SEMA3DO95025 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
SEMA3DO95025 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SEMA3DO95025 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SEMA3DO95025 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC17.2■□□□□ 0.34
SEMA3DO95025 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC17.2■□□□□ 0.34
SEMA3DO95025 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC17.2■□□□□ 0.34
SEMA3DO95025 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SEMA3DO95025 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
SEMA3DO95025 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SEMA3DO95025 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC17.2■□□□□ 0.34
SEMA3DO95025 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
SEMA3DO95025 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SEMA3DO95025 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
SEMA3DO95025 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC17.2■□□□□ 0.34
SEMA3DO95025 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SEMA3DO95025 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC17.2■□□□□ 0.34
SEMA3DO95025 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
SEMA3DO95025 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
SEMA3DO95025 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
SEMA3DO95025 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC17.19■□□□□ 0.34
SEMA3DO95025 AC099398.1-201ENST00000567919 2776 ntBASIC17.19■□□□□ 0.34
SEMA3DO95025 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SEMA3DO95025 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SEMA3DO95025 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
SEMA3DO95025 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
SEMA3DO95025 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
SEMA3DO95025 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
SEMA3DO95025 HBZP1-201ENST00000354915 429 ntBASIC17.19■□□□□ 0.34
SEMA3DO95025 MIR662-201ENST00000384847 95 ntBASIC17.19■□□□□ 0.34
SEMA3DO95025 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC17.19■□□□□ 0.34
SEMA3DO95025 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SEMA3DO95025 RCN1P1-201ENST00000400413 996 ntBASIC17.19■□□□□ 0.34
SEMA3DO95025 DDT-203ENST00000403754 569 ntTSL 3 BASIC17.19■□□□□ 0.34
SEMA3DO95025 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC17.19■□□□□ 0.34
SEMA3DO95025 DDT-206ENST00000430101 573 ntTSL 2 BASIC17.19■□□□□ 0.34
SEMA3DO95025 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC17.19■□□□□ 0.34
SEMA3DO95025 AC092597.1-201ENST00000487352 616 ntBASIC17.19■□□□□ 0.34
SEMA3DO95025 AC063952.2-201ENST00000498792 1227 ntBASIC17.19■□□□□ 0.34
SEMA3DO95025 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC17.19■□□□□ 0.34
SEMA3DO95025 PPOX-214ENST00000535223 664 ntTSL 3 BASIC17.19■□□□□ 0.34
SEMA3DO95025 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
SEMA3DO95025 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC17.19■□□□□ 0.34
SEMA3DO95025 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC17.19■□□□□ 0.34
SEMA3DO95025 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
SEMA3DO95025 SPEG-225ENST00000617028 815 ntTSL 5 BASIC17.19■□□□□ 0.34
SEMA3DO95025 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
SEMA3DO95025 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SEMA3DO95025 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC17.19■□□□□ 0.34
SEMA3DO95025 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SEMA3DO95025 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SEMA3DO95025 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 68.6 ms