Protein–RNA interactions for Protein: O75400

PRPF40A, Pre-mRNA-processing factor 40 homolog A, humanhuman

Known RBP Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40AO75400 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
PRPF40AO75400 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
PRPF40AO75400 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.94
PRPF40AO75400 AC036111.1-201ENST00000533973 1582 ntBASIC20.89■□□□□ 0.94
PRPF40AO75400 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC20.89■□□□□ 0.94
PRPF40AO75400 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.94
PRPF40AO75400 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
PRPF40AO75400 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC20.89■□□□□ 0.94
PRPF40AO75400 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
PRPF40AO75400 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.93
PRPF40AO75400 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
PRPF40AO75400 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC20.89■□□□□ 0.93
PRPF40AO75400 FAM197Y1-201ENST00000421178 764 ntBASIC20.89■□□□□ 0.93
PRPF40AO75400 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC20.89■□□□□ 0.93
PRPF40AO75400 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC20.89■□□□□ 0.93
PRPF40AO75400 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC20.89■□□□□ 0.93
PRPF40AO75400 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
PRPF40AO75400 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC20.89■□□□□ 0.93
PRPF40AO75400 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
PRPF40AO75400 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
PRPF40AO75400 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC20.89■□□□□ 0.93
PRPF40AO75400 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
PRPF40AO75400 UBALD1-205ENST00000590891 2641 ntBASIC20.89■□□□□ 0.93
PRPF40AO75400 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
PRPF40AO75400 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
PRPF40AO75400 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
PRPF40AO75400 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
PRPF40AO75400 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
PRPF40AO75400 AL118508.1-201ENST00000613502 2345 ntBASIC20.88■□□□□ 0.93
PRPF40AO75400 KRT17P2-201ENST00000300992 1314 ntBASIC20.88■□□□□ 0.93
PRPF40AO75400 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PRPF40AO75400 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PRPF40AO75400 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC20.88■□□□□ 0.93
PRPF40AO75400 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PRPF40AO75400 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC20.88■□□□□ 0.93
PRPF40AO75400 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC20.88■□□□□ 0.93
PRPF40AO75400 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC20.88■□□□□ 0.93
PRPF40AO75400 NAT14-202ENST00000587400 416 ntTSL 5 BASIC20.88■□□□□ 0.93
PRPF40AO75400 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
PRPF40AO75400 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PRPF40AO75400 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC20.88■□□□□ 0.93
PRPF40AO75400 AC100803.2-201ENST00000562459 1963 ntBASIC20.88■□□□□ 0.93
PRPF40AO75400 AL138688.1-201ENST00000624851 1594 ntBASIC20.88■□□□□ 0.93
PRPF40AO75400 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
PRPF40AO75400 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
PRPF40AO75400 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PRPF40AO75400 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC20.88■□□□□ 0.93
PRPF40AO75400 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PRPF40AO75400 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PRPF40AO75400 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
PRPF40AO75400 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PRPF40AO75400 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC20.87■□□□□ 0.93
PRPF40AO75400 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC20.87■□□□□ 0.93
PRPF40AO75400 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PRPF40AO75400 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PRPF40AO75400 PENK-204ENST00000518770 863 ntTSL 2 BASIC20.87■□□□□ 0.93
PRPF40AO75400 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC20.87■□□□□ 0.93
PRPF40AO75400 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC20.87■□□□□ 0.93
PRPF40AO75400 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC20.87■□□□□ 0.93
PRPF40AO75400 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PRPF40AO75400 AC018695.7-201ENST00000624587 2492 ntBASIC20.87■□□□□ 0.93
PRPF40AO75400 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
PRPF40AO75400 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC20.87■□□□□ 0.93
PRPF40AO75400 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC20.87■□□□□ 0.93
PRPF40AO75400 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC20.87■□□□□ 0.93
PRPF40AO75400 HR-201ENST00000312841 5351 ntTSL 5 BASIC20.86■□□□□ 0.93
PRPF40AO75400 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PRPF40AO75400 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PRPF40AO75400 AC133963.1-201ENST00000504166 1679 ntBASIC20.86■□□□□ 0.93
PRPF40AO75400 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
PRPF40AO75400 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
PRPF40AO75400 AL121761.2-201ENST00000598007 1648 ntBASIC20.86■□□□□ 0.93
PRPF40AO75400 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
PRPF40AO75400 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PRPF40AO75400 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
PRPF40AO75400 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PRPF40AO75400 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
PRPF40AO75400 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC20.86■□□□□ 0.93
PRPF40AO75400 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC20.86■□□□□ 0.93
PRPF40AO75400 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC20.86■□□□□ 0.93
PRPF40AO75400 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC20.86■□□□□ 0.93
PRPF40AO75400 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC20.86■□□□□ 0.93
PRPF40AO75400 GRAP-204ENST00000573099 846 ntTSL 3 BASIC20.86■□□□□ 0.93
PRPF40AO75400 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC20.86■□□□□ 0.93
PRPF40AO75400 MIR4785-201ENST00000585005 73 ntBASIC20.86■□□□□ 0.93
PRPF40AO75400 AP000692.2-201ENST00000608391 879 ntBASIC20.86■□□□□ 0.93
PRPF40AO75400 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC20.86■□□□□ 0.93
PRPF40AO75400 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
PRPF40AO75400 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC20.86■□□□□ 0.93
PRPF40AO75400 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
PRPF40AO75400 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
PRPF40AO75400 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PRPF40AO75400 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PRPF40AO75400 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
PRPF40AO75400 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC20.85■□□□□ 0.93
PRPF40AO75400 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
PRPF40AO75400 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
PRPF40AO75400 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
PRPF40AO75400 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC20.85■□□□□ 0.93
PRPF40AO75400 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms