Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 AC124242.1-203ENST00000517747 817 ntTSL 3 BASIC24.47■■□□□ 1.51
MSH5O43196 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC24.47■■□□□ 1.51
MSH5O43196 MIR3180-1-201ENST00000580374 94 ntBASIC24.47■■□□□ 1.51
MSH5O43196 MIR3180-3-201ENST00000584616 94 ntBASIC24.47■■□□□ 1.51
MSH5O43196 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC24.47■■□□□ 1.51
MSH5O43196 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC24.47■■□□□ 1.51
MSH5O43196 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC24.47■■□□□ 1.51
MSH5O43196 GBA3-207ENST00000613293 1233 ntTSL 5 BASIC24.47■■□□□ 1.51
MSH5O43196 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
MSH5O43196 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC24.47■■□□□ 1.51
MSH5O43196 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC24.47■■□□□ 1.51
MSH5O43196 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC24.47■■□□□ 1.51
MSH5O43196 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC24.47■■□□□ 1.51
MSH5O43196 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC24.47■■□□□ 1.51
MSH5O43196 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC24.47■■□□□ 1.51
MSH5O43196 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC24.47■■□□□ 1.51
MSH5O43196 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC24.47■■□□□ 1.51
MSH5O43196 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
MSH5O43196 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC24.46■■□□□ 1.51
MSH5O43196 AC090164.3-201ENST00000610780 2143 ntBASIC24.46■■□□□ 1.51
MSH5O43196 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
MSH5O43196 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
MSH5O43196 KLRC3-202ENST00000396439 1028 ntAPPRIS ALT2 TSL 5 BASIC24.46■■□□□ 1.51
MSH5O43196 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC24.46■■□□□ 1.51
MSH5O43196 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
MSH5O43196 AL117351.2-201ENST00000513571 157 ntBASIC24.46■■□□□ 1.51
MSH5O43196 AC131902.1-201ENST00000521558 594 ntTSL 3 BASIC24.46■■□□□ 1.51
MSH5O43196 AC079917.1-201ENST00000527828 584 ntTSL 3 BASIC24.46■■□□□ 1.51
MSH5O43196 AC068775.2-201ENST00000539033 998 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
MSH5O43196 AC122108.2-201ENST00000611946 526 ntBASIC24.46■■□□□ 1.51
MSH5O43196 AL031008.1-201ENST00000619963 541 ntBASIC24.46■■□□□ 1.51
MSH5O43196 LINC01108-202ENST00000635227 776 ntTSL 3 BASIC24.46■■□□□ 1.51
MSH5O43196 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
MSH5O43196 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
MSH5O43196 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
MSH5O43196 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC24.46■■□□□ 1.51
MSH5O43196 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC24.46■■□□□ 1.51
MSH5O43196 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
MSH5O43196 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
MSH5O43196 KRT8P41-201ENST00000533985 1514 ntBASIC24.45■■□□□ 1.51
MSH5O43196 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.51
MSH5O43196 KLRC1-202ENST00000359151 1407 ntAPPRIS P4 TSL 1 (best) BASIC24.45■■□□□ 1.51
MSH5O43196 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC24.45■■□□□ 1.51
MSH5O43196 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.51
MSH5O43196 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.51
MSH5O43196 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
MSH5O43196 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC24.45■■□□□ 1.5
MSH5O43196 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
MSH5O43196 LMO7DN-201ENST00000318245 1167 ntAPPRIS P1 TSL 2 BASIC24.45■■□□□ 1.5
MSH5O43196 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
MSH5O43196 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
MSH5O43196 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC24.45■■□□□ 1.5
MSH5O43196 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
MSH5O43196 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC24.45■■□□□ 1.5
MSH5O43196 DSCR10-201ENST00000432141 860 ntTSL 3 BASIC24.45■■□□□ 1.5
MSH5O43196 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC24.45■■□□□ 1.5
MSH5O43196 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC24.45■■□□□ 1.5
MSH5O43196 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
MSH5O43196 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC24.45■■□□□ 1.5
MSH5O43196 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC24.45■■□□□ 1.5
MSH5O43196 AC092131.1-201ENST00000564046 548 ntTSL 4 BASIC24.45■■□□□ 1.5
MSH5O43196 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC24.45■■□□□ 1.5
MSH5O43196 AP002414.4-201ENST00000589764 1148 ntBASIC24.45■■□□□ 1.5
MSH5O43196 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
MSH5O43196 AC243960.7-201ENST00000623532 707 ntBASIC24.45■■□□□ 1.5
MSH5O43196 AC080188.3-201ENST00000624842 748 ntBASIC24.45■■□□□ 1.5
MSH5O43196 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC24.45■■□□□ 1.5
MSH5O43196 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC24.45■■□□□ 1.5
MSH5O43196 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC24.45■■□□□ 1.5
MSH5O43196 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC24.45■■□□□ 1.5
MSH5O43196 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC24.45■■□□□ 1.5
MSH5O43196 AC124067.4-201ENST00000519691 2379 ntBASIC24.45■■□□□ 1.5
MSH5O43196 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
MSH5O43196 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
MSH5O43196 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC24.45■■□□□ 1.5
MSH5O43196 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
MSH5O43196 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
MSH5O43196 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
MSH5O43196 PCDHA12-202ENST00000613593 2588 ntBASIC24.45■■□□□ 1.5
MSH5O43196 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC24.44■■□□□ 1.5
MSH5O43196 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
MSH5O43196 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
MSH5O43196 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
MSH5O43196 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC24.44■■□□□ 1.5
MSH5O43196 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
MSH5O43196 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
MSH5O43196 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC24.44■■□□□ 1.5
MSH5O43196 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC24.44■■□□□ 1.5
MSH5O43196 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
MSH5O43196 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
MSH5O43196 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
MSH5O43196 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC24.44■■□□□ 1.5
MSH5O43196 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC24.44■■□□□ 1.5
MSH5O43196 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
MSH5O43196 PRKAA1-201ENST00000296800 1134 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
MSH5O43196 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
MSH5O43196 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC24.44■■□□□ 1.5
MSH5O43196 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
MSH5O43196 NREP-217ENST00000509025 987 ntTSL 3 BASIC24.44■■□□□ 1.5
MSH5O43196 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC24.44■■□□□ 1.5
Retrieved 100 of 98,524 protein–RNA pairs in 113.8 ms