Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
CACNA1AO00555 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CACNA1AO00555 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CACNA1AO00555 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC16.72■□□□□ 0.27
CACNA1AO00555 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
CACNA1AO00555 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC16.72■□□□□ 0.27
CACNA1AO00555 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CACNA1AO00555 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC16.72■□□□□ 0.27
CACNA1AO00555 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CACNA1AO00555 AC100757.3-201ENST00000622361 1406 ntBASIC16.72■□□□□ 0.27
CACNA1AO00555 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
CACNA1AO00555 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CACNA1AO00555 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC16.72■□□□□ 0.27
CACNA1AO00555 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC16.72■□□□□ 0.27
CACNA1AO00555 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CACNA1AO00555 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CACNA1AO00555 MXI1-205ENST00000393134 889 ntTSL 2 BASIC16.72■□□□□ 0.27
CACNA1AO00555 ACTBP11-201ENST00000436287 1126 ntBASIC16.72■□□□□ 0.27
CACNA1AO00555 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
CACNA1AO00555 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CACNA1AO00555 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC16.72■□□□□ 0.27
CACNA1AO00555 HTATIP2-205ENST00000530266 713 ntTSL 3 BASIC16.72■□□□□ 0.27
CACNA1AO00555 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CACNA1AO00555 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC16.72■□□□□ 0.27
CACNA1AO00555 CDK4-206ENST00000549606 558 ntTSL 2 BASIC16.72■□□□□ 0.27
CACNA1AO00555 AC243562.1-201ENST00000560672 389 ntBASIC16.72■□□□□ 0.27
CACNA1AO00555 UROS-202ENST00000368778 1556 ntTSL 2 BASIC16.72■□□□□ 0.27
CACNA1AO00555 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
CACNA1AO00555 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CACNA1AO00555 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC16.72■□□□□ 0.27
CACNA1AO00555 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC16.72■□□□□ 0.27
CACNA1AO00555 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CACNA1AO00555 AKAP8P1-201ENST00000434743 1349 ntBASIC16.71■□□□□ 0.27
CACNA1AO00555 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
CACNA1AO00555 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CACNA1AO00555 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC16.71■□□□□ 0.27
CACNA1AO00555 PFAS-212ENST00000625942 396 ntTSL 5 BASIC16.71■□□□□ 0.27
CACNA1AO00555 AL139099.5-201ENST00000635274 300 ntBASIC16.71■□□□□ 0.27
CACNA1AO00555 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CACNA1AO00555 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
CACNA1AO00555 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CACNA1AO00555 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CACNA1AO00555 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC16.71■□□□□ 0.27
CACNA1AO00555 AC020907.1-201ENST00000616460 1350 ntBASIC16.71■□□□□ 0.27
CACNA1AO00555 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
CACNA1AO00555 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
CACNA1AO00555 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CACNA1AO00555 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CACNA1AO00555 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CACNA1AO00555 TP73-202ENST00000354437 2140 ntTSL 5 BASIC16.71■□□□□ 0.27
CACNA1AO00555 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
CACNA1AO00555 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC16.71■□□□□ 0.27
CACNA1AO00555 REEP4-207ENST00000523293 913 ntTSL 3 BASIC16.71■□□□□ 0.27
CACNA1AO00555 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC16.71■□□□□ 0.27
CACNA1AO00555 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
CACNA1AO00555 AC020763.1-201ENST00000567186 551 ntTSL 4 BASIC16.71■□□□□ 0.27
CACNA1AO00555 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC16.71■□□□□ 0.27
CACNA1AO00555 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
CACNA1AO00555 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC16.71■□□□□ 0.26
CACNA1AO00555 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
CACNA1AO00555 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CACNA1AO00555 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CACNA1AO00555 BTBD6P1-201ENST00000412176 1267 ntBASIC16.7■□□□□ 0.26
CACNA1AO00555 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC16.7■□□□□ 0.26
CACNA1AO00555 RBPMS2P1-201ENST00000437762 623 ntBASIC16.7■□□□□ 0.26
CACNA1AO00555 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CACNA1AO00555 ACTL9-202ENST00000612068 1252 ntBASIC16.7■□□□□ 0.26
CACNA1AO00555 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CACNA1AO00555 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC16.7■□□□□ 0.26
CACNA1AO00555 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC16.7■□□□□ 0.26
CACNA1AO00555 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CACNA1AO00555 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CACNA1AO00555 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CACNA1AO00555 AC010460.3-201ENST00000511359 1579 ntBASIC16.7■□□□□ 0.26
CACNA1AO00555 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CACNA1AO00555 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CACNA1AO00555 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
CACNA1AO00555 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CACNA1AO00555 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CACNA1AO00555 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CACNA1AO00555 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
CACNA1AO00555 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CACNA1AO00555 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CACNA1AO00555 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC16.7■□□□□ 0.26
CACNA1AO00555 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC16.7■□□□□ 0.26
CACNA1AO00555 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
CACNA1AO00555 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CACNA1AO00555 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC16.7■□□□□ 0.26
CACNA1AO00555 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
CACNA1AO00555 MTMR9LP-203ENST00000426597 1545 ntBASIC16.7■□□□□ 0.26
CACNA1AO00555 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC16.7■□□□□ 0.26
CACNA1AO00555 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CACNA1AO00555 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC16.7■□□□□ 0.26
CACNA1AO00555 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC16.7■□□□□ 0.26
CACNA1AO00555 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CACNA1AO00555 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC16.69■□□□□ 0.26
CACNA1AO00555 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
CACNA1AO00555 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CACNA1AO00555 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC16.69■□□□□ 0.26
CACNA1AO00555 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms