Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 AC011558.1-201ENST00000623459 338 ntBASIC16.7■□□□□ 0.26
HMGN4O00479 AC073912.3-201ENST00000624414 853 ntBASIC16.7■□□□□ 0.26
HMGN4O00479 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HMGN4O00479 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC16.7■□□□□ 0.26
HMGN4O00479 AC009949.1-201ENST00000623048 1830 ntBASIC16.7■□□□□ 0.26
HMGN4O00479 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC16.7■□□□□ 0.26
HMGN4O00479 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HMGN4O00479 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
HMGN4O00479 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
HMGN4O00479 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HMGN4O00479 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
HMGN4O00479 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
HMGN4O00479 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HMGN4O00479 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
HMGN4O00479 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
HMGN4O00479 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC16.69■□□□□ 0.26
HMGN4O00479 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HMGN4O00479 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
HMGN4O00479 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HMGN4O00479 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HMGN4O00479 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
HMGN4O00479 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
HMGN4O00479 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
HMGN4O00479 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
HMGN4O00479 TERF1P1-201ENST00000311003 1181 ntBASIC16.69■□□□□ 0.26
HMGN4O00479 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
HMGN4O00479 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HMGN4O00479 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
HMGN4O00479 STARP1-201ENST00000397973 869 ntBASIC16.69■□□□□ 0.26
HMGN4O00479 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC16.69■□□□□ 0.26
HMGN4O00479 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
HMGN4O00479 AC139887.4-201ENST00000607877 719 ntBASIC16.69■□□□□ 0.26
HMGN4O00479 AC005363.2-201ENST00000618631 242 ntBASIC16.69■□□□□ 0.26
HMGN4O00479 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HMGN4O00479 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HMGN4O00479 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HMGN4O00479 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
HMGN4O00479 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
HMGN4O00479 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC16.69■□□□□ 0.26
HMGN4O00479 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HMGN4O00479 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HMGN4O00479 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
HMGN4O00479 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HMGN4O00479 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC16.69■□□□□ 0.26
HMGN4O00479 AC073508.3-201ENST00000619697 1419 ntBASIC16.69■□□□□ 0.26
HMGN4O00479 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
HMGN4O00479 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HMGN4O00479 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC16.69■□□□□ 0.26
HMGN4O00479 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HMGN4O00479 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HMGN4O00479 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
HMGN4O00479 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
HMGN4O00479 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC16.68■□□□□ 0.26
HMGN4O00479 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC16.68■□□□□ 0.26
HMGN4O00479 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HMGN4O00479 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
HMGN4O00479 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
HMGN4O00479 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
HMGN4O00479 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HMGN4O00479 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HMGN4O00479 LINC00304-203ENST00000565008 1864 ntBASIC16.68■□□□□ 0.26
HMGN4O00479 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HMGN4O00479 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC16.68■□□□□ 0.26
HMGN4O00479 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HMGN4O00479 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC16.68■□□□□ 0.26
HMGN4O00479 AL137013.1-201ENST00000432946 1228 ntBASIC16.68■□□□□ 0.26
HMGN4O00479 BX664615.1-201ENST00000443558 458 ntBASIC16.68■□□□□ 0.26
HMGN4O00479 YBX1P2-201ENST00000489612 999 ntBASIC16.68■□□□□ 0.26
HMGN4O00479 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HMGN4O00479 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
HMGN4O00479 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC16.68■□□□□ 0.26
HMGN4O00479 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC16.68■□□□□ 0.26
HMGN4O00479 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HMGN4O00479 AC116407.2-201ENST00000613639 860 ntBASIC16.68■□□□□ 0.26
HMGN4O00479 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
HMGN4O00479 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HMGN4O00479 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
HMGN4O00479 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
HMGN4O00479 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HMGN4O00479 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC16.68■□□□□ 0.26
HMGN4O00479 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC16.68■□□□□ 0.26
HMGN4O00479 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HMGN4O00479 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
HMGN4O00479 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HMGN4O00479 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HMGN4O00479 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC16.68■□□□□ 0.26
HMGN4O00479 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HMGN4O00479 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
HMGN4O00479 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HMGN4O00479 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HMGN4O00479 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HMGN4O00479 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC16.67■□□□□ 0.26
HMGN4O00479 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC16.67■□□□□ 0.26
HMGN4O00479 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC16.67■□□□□ 0.26
HMGN4O00479 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
HMGN4O00479 KRT8P47-201ENST00000604727 1398 ntBASIC16.67■□□□□ 0.26
HMGN4O00479 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HMGN4O00479 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
HMGN4O00479 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC16.67■□□□□ 0.26
HMGN4O00479 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms