Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC27.03■■□□□ 1.92
COL17A1Q9UMD9 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC27.03■■□□□ 1.92
COL17A1Q9UMD9 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC27.02■■□□□ 1.92
COL17A1Q9UMD9 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC27.02■■□□□ 1.92
COL17A1Q9UMD9 IGHV3OR16-6-201ENST00000568775 360 ntBASIC27.02■■□□□ 1.92
COL17A1Q9UMD9 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC27.02■■□□□ 1.92
COL17A1Q9UMD9 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC27.02■■□□□ 1.92
COL17A1Q9UMD9 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC27.02■■□□□ 1.92
COL17A1Q9UMD9 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
COL17A1Q9UMD9 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC27.02■■□□□ 1.92
COL17A1Q9UMD9 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC27.02■■□□□ 1.92
COL17A1Q9UMD9 NEK7-201ENST00000367383 586 ntTSL 2 BASIC27.01■■□□□ 1.91
COL17A1Q9UMD9 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC27.01■■□□□ 1.91
COL17A1Q9UMD9 CENPM-205ENST00000404067 905 ntTSL 3 BASIC27.01■■□□□ 1.91
COL17A1Q9UMD9 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC27.01■■□□□ 1.91
COL17A1Q9UMD9 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC27.01■■□□□ 1.91
COL17A1Q9UMD9 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC27.01■■□□□ 1.91
COL17A1Q9UMD9 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC27.01■■□□□ 1.91
COL17A1Q9UMD9 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC27.01■■□□□ 1.91
COL17A1Q9UMD9 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC27.01■■□□□ 1.91
COL17A1Q9UMD9 BSG-215ENST00000618006 1329 ntTSL 2 BASIC27.01■■□□□ 1.91
COL17A1Q9UMD9 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC27.01■■□□□ 1.91
COL17A1Q9UMD9 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC27.01■■□□□ 1.91
COL17A1Q9UMD9 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC27■■□□□ 1.91
COL17A1Q9UMD9 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
COL17A1Q9UMD9 COX5BP8-201ENST00000416911 349 ntBASIC27■■□□□ 1.91
COL17A1Q9UMD9 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC27■■□□□ 1.91
COL17A1Q9UMD9 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC27■■□□□ 1.91
COL17A1Q9UMD9 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC27■■□□□ 1.91
COL17A1Q9UMD9 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC27■■□□□ 1.91
COL17A1Q9UMD9 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
COL17A1Q9UMD9 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC27■■□□□ 1.91
COL17A1Q9UMD9 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
COL17A1Q9UMD9 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC27■■□□□ 1.91
COL17A1Q9UMD9 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
COL17A1Q9UMD9 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC27■■□□□ 1.91
COL17A1Q9UMD9 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
COL17A1Q9UMD9 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
COL17A1Q9UMD9 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
COL17A1Q9UMD9 HNRNPFP1-201ENST00000391730 1133 ntBASIC27■■□□□ 1.91
COL17A1Q9UMD9 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC27■■□□□ 1.91
COL17A1Q9UMD9 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC27■■□□□ 1.91
COL17A1Q9UMD9 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC27■■□□□ 1.91
COL17A1Q9UMD9 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC27■■□□□ 1.91
COL17A1Q9UMD9 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC27■■□□□ 1.91
COL17A1Q9UMD9 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC27■■□□□ 1.91
COL17A1Q9UMD9 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC26.99■■□□□ 1.91
COL17A1Q9UMD9 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
COL17A1Q9UMD9 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC26.99■■□□□ 1.91
COL17A1Q9UMD9 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
COL17A1Q9UMD9 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
COL17A1Q9UMD9 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
COL17A1Q9UMD9 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC26.99■■□□□ 1.91
COL17A1Q9UMD9 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
COL17A1Q9UMD9 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC26.99■■□□□ 1.91
COL17A1Q9UMD9 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
COL17A1Q9UMD9 AC096633.1-201ENST00000422446 749 ntBASIC26.99■■□□□ 1.91
COL17A1Q9UMD9 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
COL17A1Q9UMD9 COX11-202ENST00000571584 1108 ntTSL 2 BASIC26.99■■□□□ 1.91
COL17A1Q9UMD9 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC26.99■■□□□ 1.91
COL17A1Q9UMD9 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
COL17A1Q9UMD9 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC26.99■■□□□ 1.91
COL17A1Q9UMD9 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
COL17A1Q9UMD9 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
COL17A1Q9UMD9 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC26.98■■□□□ 1.91
COL17A1Q9UMD9 AC006116.8-202ENST00000587620 1550 ntBASIC26.98■■□□□ 1.91
COL17A1Q9UMD9 ADM-207ENST00000530439 1839 ntTSL 2 BASIC26.98■■□□□ 1.91
COL17A1Q9UMD9 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC26.98■■□□□ 1.91
COL17A1Q9UMD9 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC26.98■■□□□ 1.91
COL17A1Q9UMD9 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
COL17A1Q9UMD9 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
COL17A1Q9UMD9 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC26.98■■□□□ 1.91
COL17A1Q9UMD9 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC26.98■■□□□ 1.91
COL17A1Q9UMD9 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC26.98■■□□□ 1.91
COL17A1Q9UMD9 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC26.98■■□□□ 1.91
COL17A1Q9UMD9 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC26.98■■□□□ 1.91
COL17A1Q9UMD9 AL353135.1-201ENST00000606729 504 ntBASIC26.98■■□□□ 1.91
COL17A1Q9UMD9 SRP9-204ENST00000619790 377 ntTSL 2 BASIC26.98■■□□□ 1.91
COL17A1Q9UMD9 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC26.98■■□□□ 1.91
COL17A1Q9UMD9 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC26.98■■□□□ 1.91
COL17A1Q9UMD9 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
COL17A1Q9UMD9 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC26.98■■□□□ 1.91
COL17A1Q9UMD9 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
COL17A1Q9UMD9 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC26.97■■□□□ 1.91
COL17A1Q9UMD9 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC26.97■■□□□ 1.91
COL17A1Q9UMD9 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
COL17A1Q9UMD9 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC26.97■■□□□ 1.91
COL17A1Q9UMD9 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC26.97■■□□□ 1.91
COL17A1Q9UMD9 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
COL17A1Q9UMD9 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
COL17A1Q9UMD9 NABP1-203ENST00000409510 843 ntTSL 5 BASIC26.97■■□□□ 1.91
COL17A1Q9UMD9 AC023141.13-201ENST00000604991 943 ntBASIC26.97■■□□□ 1.91
COL17A1Q9UMD9 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC26.97■■□□□ 1.91
COL17A1Q9UMD9 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC26.97■■□□□ 1.91
COL17A1Q9UMD9 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC26.97■■□□□ 1.91
COL17A1Q9UMD9 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC26.97■■□□□ 1.91
COL17A1Q9UMD9 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC26.97■■□□□ 1.91
COL17A1Q9UMD9 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
COL17A1Q9UMD9 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
COL17A1Q9UMD9 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms