Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SIX4Q9UIU6 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
SIX4Q9UIU6 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SIX4Q9UIU6 AC009949.1-201ENST00000623048 1830 ntBASIC19.18■□□□□ 0.66
SIX4Q9UIU6 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SIX4Q9UIU6 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SIX4Q9UIU6 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SIX4Q9UIU6 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC19.18■□□□□ 0.66
SIX4Q9UIU6 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC19.18■□□□□ 0.66
SIX4Q9UIU6 MED29-202ENST00000594368 1471 ntTSL 2 BASIC19.18■□□□□ 0.66
SIX4Q9UIU6 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC19.18■□□□□ 0.66
SIX4Q9UIU6 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SIX4Q9UIU6 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SIX4Q9UIU6 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
SIX4Q9UIU6 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SIX4Q9UIU6 RCN1P2-201ENST00000398357 915 ntBASIC19.18■□□□□ 0.66
SIX4Q9UIU6 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC19.18■□□□□ 0.66
SIX4Q9UIU6 AC007967.3-201ENST00000434308 558 ntBASIC19.18■□□□□ 0.66
SIX4Q9UIU6 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC19.18■□□□□ 0.66
SIX4Q9UIU6 UNC93B7-201ENST00000509439 705 ntBASIC19.18■□□□□ 0.66
SIX4Q9UIU6 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SIX4Q9UIU6 SDHD-206ENST00000528182 754 ntTSL 3 BASIC19.18■□□□□ 0.66
SIX4Q9UIU6 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC19.18■□□□□ 0.66
SIX4Q9UIU6 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC19.18■□□□□ 0.66
SIX4Q9UIU6 MNT-208ENST00000575394 606 ntTSL 4 BASIC19.18■□□□□ 0.66
SIX4Q9UIU6 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC19.18■□□□□ 0.66
SIX4Q9UIU6 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SIX4Q9UIU6 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SIX4Q9UIU6 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC19.18■□□□□ 0.66
SIX4Q9UIU6 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
SIX4Q9UIU6 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SIX4Q9UIU6 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SIX4Q9UIU6 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC19.18■□□□□ 0.66
SIX4Q9UIU6 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SIX4Q9UIU6 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SIX4Q9UIU6 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC19.18■□□□□ 0.66
SIX4Q9UIU6 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SIX4Q9UIU6 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
SIX4Q9UIU6 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SIX4Q9UIU6 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC19.17■□□□□ 0.66
SIX4Q9UIU6 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SIX4Q9UIU6 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SIX4Q9UIU6 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SIX4Q9UIU6 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SIX4Q9UIU6 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SIX4Q9UIU6 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC19.17■□□□□ 0.66
SIX4Q9UIU6 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC19.17■□□□□ 0.66
SIX4Q9UIU6 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC19.17■□□□□ 0.66
SIX4Q9UIU6 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SIX4Q9UIU6 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC19.17■□□□□ 0.66
SIX4Q9UIU6 NUS1P2-201ENST00000417358 873 ntBASIC19.17■□□□□ 0.66
SIX4Q9UIU6 POM121L3P-201ENST00000419331 1163 ntBASIC19.17■□□□□ 0.66
SIX4Q9UIU6 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC19.17■□□□□ 0.66
SIX4Q9UIU6 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC19.17■□□□□ 0.66
SIX4Q9UIU6 KRT18P31-201ENST00000506277 1292 ntBASIC19.17■□□□□ 0.66
SIX4Q9UIU6 AC009533.2-201ENST00000543664 586 ntBASIC19.17■□□□□ 0.66
SIX4Q9UIU6 KRT126P-201ENST00000549467 1181 ntBASIC19.17■□□□□ 0.66
SIX4Q9UIU6 AC011467.2-201ENST00000598425 242 ntBASIC19.17■□□□□ 0.66
SIX4Q9UIU6 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC19.17■□□□□ 0.66
SIX4Q9UIU6 AC114341.1-201ENST00000618070 349 ntBASIC19.17■□□□□ 0.66
SIX4Q9UIU6 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC19.17■□□□□ 0.66
SIX4Q9UIU6 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC19.17■□□□□ 0.66
SIX4Q9UIU6 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
SIX4Q9UIU6 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SIX4Q9UIU6 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SIX4Q9UIU6 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SIX4Q9UIU6 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC19.17■□□□□ 0.66
SIX4Q9UIU6 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC19.17■□□□□ 0.66
SIX4Q9UIU6 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
SIX4Q9UIU6 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SIX4Q9UIU6 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
SIX4Q9UIU6 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
SIX4Q9UIU6 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SIX4Q9UIU6 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
SIX4Q9UIU6 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC19.16■□□□□ 0.66
SIX4Q9UIU6 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SIX4Q9UIU6 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SIX4Q9UIU6 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SIX4Q9UIU6 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SIX4Q9UIU6 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC19.16■□□□□ 0.66
SIX4Q9UIU6 IGHV3OR16-7-201ENST00000604106 360 ntBASIC19.16■□□□□ 0.66
SIX4Q9UIU6 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
SIX4Q9UIU6 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SIX4Q9UIU6 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SIX4Q9UIU6 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SIX4Q9UIU6 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SIX4Q9UIU6 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
SIX4Q9UIU6 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
SIX4Q9UIU6 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
SIX4Q9UIU6 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
SIX4Q9UIU6 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
SIX4Q9UIU6 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SIX4Q9UIU6 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
SIX4Q9UIU6 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SIX4Q9UIU6 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC19.15■□□□□ 0.66
SIX4Q9UIU6 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SIX4Q9UIU6 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC19.15■□□□□ 0.66
SIX4Q9UIU6 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC19.15■□□□□ 0.66
SIX4Q9UIU6 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC19.15■□□□□ 0.66
SIX4Q9UIU6 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms