Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
CCDC39Q9UFE4 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC39Q9UFE4 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC39Q9UFE4 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC39Q9UFE4 CYP51A1P1-201ENST00000492267 1507 ntBASIC20.8■□□□□ 0.92
CCDC39Q9UFE4 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC20.8■□□□□ 0.92
CCDC39Q9UFE4 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC39Q9UFE4 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC20.8■□□□□ 0.92
CCDC39Q9UFE4 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC39Q9UFE4 PP12613-201ENST00000424958 2230 ntBASIC20.8■□□□□ 0.92
CCDC39Q9UFE4 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
CCDC39Q9UFE4 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC39Q9UFE4 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC39Q9UFE4 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC39Q9UFE4 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
CCDC39Q9UFE4 INGX-201ENST00000359239 846 ntBASIC20.8■□□□□ 0.92
CCDC39Q9UFE4 CRAT-202ENST00000393384 973 ntTSL 2 BASIC20.8■□□□□ 0.92
CCDC39Q9UFE4 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC39Q9UFE4 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC39Q9UFE4 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC39Q9UFE4 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC39Q9UFE4 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC20.8■□□□□ 0.92
CCDC39Q9UFE4 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC20.8■□□□□ 0.92
CCDC39Q9UFE4 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC39Q9UFE4 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC39Q9UFE4 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC39Q9UFE4 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC39Q9UFE4 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC39Q9UFE4 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC39Q9UFE4 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC39Q9UFE4 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC20.79■□□□□ 0.92
CCDC39Q9UFE4 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC20.79■□□□□ 0.92
CCDC39Q9UFE4 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC39Q9UFE4 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC20.79■□□□□ 0.92
CCDC39Q9UFE4 AC018695.7-201ENST00000624587 2492 ntBASIC20.79■□□□□ 0.92
CCDC39Q9UFE4 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
CCDC39Q9UFE4 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC20.79■□□□□ 0.92
CCDC39Q9UFE4 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC20.79■□□□□ 0.92
CCDC39Q9UFE4 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC20.79■□□□□ 0.92
CCDC39Q9UFE4 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC39Q9UFE4 ILF2-202ENST00000368681 726 ntTSL 2 BASIC20.79■□□□□ 0.92
CCDC39Q9UFE4 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC39Q9UFE4 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC39Q9UFE4 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
CCDC39Q9UFE4 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC20.79■□□□□ 0.92
CCDC39Q9UFE4 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC20.79■□□□□ 0.92
CCDC39Q9UFE4 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC20.79■□□□□ 0.92
CCDC39Q9UFE4 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC20.79■□□□□ 0.92
CCDC39Q9UFE4 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC20.79■□□□□ 0.92
CCDC39Q9UFE4 REXO1L9P-201ENST00000604264 2108 ntBASIC20.79■□□□□ 0.92
CCDC39Q9UFE4 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
CCDC39Q9UFE4 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC20.79■□□□□ 0.92
CCDC39Q9UFE4 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
CCDC39Q9UFE4 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC39Q9UFE4 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
CCDC39Q9UFE4 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC39Q9UFE4 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC39Q9UFE4 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
CCDC39Q9UFE4 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC39Q9UFE4 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC39Q9UFE4 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC39Q9UFE4 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
CCDC39Q9UFE4 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC39Q9UFE4 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC39Q9UFE4 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC39Q9UFE4 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC39Q9UFE4 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC39Q9UFE4 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
CCDC39Q9UFE4 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC39Q9UFE4 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC20.78■□□□□ 0.92
CCDC39Q9UFE4 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
CCDC39Q9UFE4 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC20.78■□□□□ 0.92
CCDC39Q9UFE4 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC39Q9UFE4 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC20.78■□□□□ 0.92
CCDC39Q9UFE4 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC39Q9UFE4 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC39Q9UFE4 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC39Q9UFE4 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC20.78■□□□□ 0.92
CCDC39Q9UFE4 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC39Q9UFE4 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC39Q9UFE4 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC20.78■□□□□ 0.92
CCDC39Q9UFE4 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC20.78■□□□□ 0.92
CCDC39Q9UFE4 AL512604.3-201ENST00000569583 964 ntBASIC20.78■□□□□ 0.92
CCDC39Q9UFE4 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC20.78■□□□□ 0.92
CCDC39Q9UFE4 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC39Q9UFE4 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC39Q9UFE4 BANP-227ENST00000626016 2144 ntTSL 2 BASIC20.78■□□□□ 0.92
CCDC39Q9UFE4 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
CCDC39Q9UFE4 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC39Q9UFE4 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC39Q9UFE4 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
CCDC39Q9UFE4 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC39Q9UFE4 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC20.78■□□□□ 0.92
CCDC39Q9UFE4 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC20.78■□□□□ 0.92
CCDC39Q9UFE4 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC20.78■□□□□ 0.92
CCDC39Q9UFE4 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC20.77■□□□□ 0.92
CCDC39Q9UFE4 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC39Q9UFE4 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC20.77■□□□□ 0.92
CCDC39Q9UFE4 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC39Q9UFE4 POR-209ENST00000439269 1858 ntTSL 2 BASIC20.77■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms