Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS54Q9P1Q0 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
VPS54Q9P1Q0 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS54Q9P1Q0 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC20.69■□□□□ 0.9
VPS54Q9P1Q0 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC20.69■□□□□ 0.9
VPS54Q9P1Q0 MTCL1P1-201ENST00000446207 792 ntBASIC20.69■□□□□ 0.9
VPS54Q9P1Q0 RN7SL606P-201ENST00000472779 293 ntBASIC20.69■□□□□ 0.9
VPS54Q9P1Q0 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC20.69■□□□□ 0.9
VPS54Q9P1Q0 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC20.69■□□□□ 0.9
VPS54Q9P1Q0 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC20.69■□□□□ 0.9
VPS54Q9P1Q0 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
VPS54Q9P1Q0 AL592071.1-201ENST00000611956 408 ntBASIC20.69■□□□□ 0.9
VPS54Q9P1Q0 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC20.69■□□□□ 0.9
VPS54Q9P1Q0 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC20.69■□□□□ 0.9
VPS54Q9P1Q0 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS54Q9P1Q0 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS54Q9P1Q0 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
VPS54Q9P1Q0 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS54Q9P1Q0 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
VPS54Q9P1Q0 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC20.69■□□□□ 0.9
VPS54Q9P1Q0 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS54Q9P1Q0 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
VPS54Q9P1Q0 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
VPS54Q9P1Q0 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS54Q9P1Q0 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS54Q9P1Q0 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS54Q9P1Q0 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
VPS54Q9P1Q0 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC20.69■□□□□ 0.9
VPS54Q9P1Q0 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS54Q9P1Q0 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
VPS54Q9P1Q0 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
VPS54Q9P1Q0 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
VPS54Q9P1Q0 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC20.68■□□□□ 0.9
VPS54Q9P1Q0 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
VPS54Q9P1Q0 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC20.68■□□□□ 0.9
VPS54Q9P1Q0 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC20.68■□□□□ 0.9
VPS54Q9P1Q0 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC20.68■□□□□ 0.9
VPS54Q9P1Q0 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC20.68■□□□□ 0.9
VPS54Q9P1Q0 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC20.68■□□□□ 0.9
VPS54Q9P1Q0 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
VPS54Q9P1Q0 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS54Q9P1Q0 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
VPS54Q9P1Q0 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC20.68■□□□□ 0.9
VPS54Q9P1Q0 AC112698.1-201ENST00000510299 916 ntBASIC20.68■□□□□ 0.9
VPS54Q9P1Q0 AL121672.3-201ENST00000608644 468 ntBASIC20.68■□□□□ 0.9
VPS54Q9P1Q0 AC124864.1-201ENST00000623408 392 ntBASIC20.68■□□□□ 0.9
VPS54Q9P1Q0 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
VPS54Q9P1Q0 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
VPS54Q9P1Q0 AC022898.2-201ENST00000616822 1312 ntBASIC20.68■□□□□ 0.9
VPS54Q9P1Q0 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC20.68■□□□□ 0.9
VPS54Q9P1Q0 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
VPS54Q9P1Q0 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS54Q9P1Q0 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS54Q9P1Q0 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS54Q9P1Q0 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
VPS54Q9P1Q0 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
VPS54Q9P1Q0 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS54Q9P1Q0 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS54Q9P1Q0 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS54Q9P1Q0 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS54Q9P1Q0 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS54Q9P1Q0 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
VPS54Q9P1Q0 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC20.67■□□□□ 0.9
VPS54Q9P1Q0 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
VPS54Q9P1Q0 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS54Q9P1Q0 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
VPS54Q9P1Q0 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC20.67■□□□□ 0.9
VPS54Q9P1Q0 AC005332.8-201ENST00000622750 2735 ntBASIC20.67■□□□□ 0.9
VPS54Q9P1Q0 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
VPS54Q9P1Q0 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
VPS54Q9P1Q0 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
VPS54Q9P1Q0 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
VPS54Q9P1Q0 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC20.67■□□□□ 0.9
VPS54Q9P1Q0 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS54Q9P1Q0 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS54Q9P1Q0 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
VPS54Q9P1Q0 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS54Q9P1Q0 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS54Q9P1Q0 AL845331.1-201ENST00000424978 1190 ntBASIC20.67■□□□□ 0.9
VPS54Q9P1Q0 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC20.67■□□□□ 0.9
VPS54Q9P1Q0 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
VPS54Q9P1Q0 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
VPS54Q9P1Q0 GUSBP12-201ENST00000513727 720 ntBASIC20.67■□□□□ 0.9
VPS54Q9P1Q0 AC091076.1-201ENST00000610741 619 ntBASIC20.67■□□□□ 0.9
VPS54Q9P1Q0 IGHV3-41-201ENST00000613121 348 ntBASIC20.67■□□□□ 0.9
VPS54Q9P1Q0 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC20.67■□□□□ 0.9
VPS54Q9P1Q0 ANKRD20A8P-203ENST00000641373 517 ntBASIC20.67■□□□□ 0.9
VPS54Q9P1Q0 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS54Q9P1Q0 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS54Q9P1Q0 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS54Q9P1Q0 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS54Q9P1Q0 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
VPS54Q9P1Q0 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC20.67■□□□□ 0.9
VPS54Q9P1Q0 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS54Q9P1Q0 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS54Q9P1Q0 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS54Q9P1Q0 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC20.67■□□□□ 0.9
VPS54Q9P1Q0 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC20.67■□□□□ 0.9
VPS54Q9P1Q0 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS54Q9P1Q0 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 61.5 ms