Protein–RNA interactions for Protein: Q96DI7

SNRNP40, U5 small nuclear ribonucleoprotein 40 kDa protein, humanhuman

Known RBP Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40Q96DI7 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SNRNP40Q96DI7 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SNRNP40Q96DI7 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SNRNP40Q96DI7 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SNRNP40Q96DI7 SLC4A1APP2-201ENST00000424054 1259 ntBASIC16.11■□□□□ 0.17
SNRNP40Q96DI7 KRT18P27-201ENST00000427733 1299 ntBASIC16.11■□□□□ 0.17
SNRNP40Q96DI7 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC16.11■□□□□ 0.17
SNRNP40Q96DI7 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SNRNP40Q96DI7 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC16.11■□□□□ 0.17
SNRNP40Q96DI7 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC16.11■□□□□ 0.17
SNRNP40Q96DI7 SDCCAG3P1-201ENST00000589292 1150 ntBASIC16.11■□□□□ 0.17
SNRNP40Q96DI7 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC16.11■□□□□ 0.17
SNRNP40Q96DI7 AC006557.2-201ENST00000592985 1240 ntBASIC16.11■□□□□ 0.17
SNRNP40Q96DI7 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC16.11■□□□□ 0.17
SNRNP40Q96DI7 AC004817.3-201ENST00000602957 2129 ntBASIC16.11■□□□□ 0.17
SNRNP40Q96DI7 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC16.11■□□□□ 0.17
SNRNP40Q96DI7 PMPCAP1-201ENST00000508114 1576 ntBASIC16.11■□□□□ 0.17
SNRNP40Q96DI7 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SNRNP40Q96DI7 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SNRNP40Q96DI7 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SNRNP40Q96DI7 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
SNRNP40Q96DI7 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC16.11■□□□□ 0.17
SNRNP40Q96DI7 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC16.11■□□□□ 0.17
SNRNP40Q96DI7 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC16.11■□□□□ 0.17
SNRNP40Q96DI7 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC16.1■□□□□ 0.17
SNRNP40Q96DI7 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SNRNP40Q96DI7 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SNRNP40Q96DI7 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
SNRNP40Q96DI7 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SNRNP40Q96DI7 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SNRNP40Q96DI7 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SNRNP40Q96DI7 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC16.1■□□□□ 0.17
SNRNP40Q96DI7 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
SNRNP40Q96DI7 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
SNRNP40Q96DI7 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
SNRNP40Q96DI7 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SNRNP40Q96DI7 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SNRNP40Q96DI7 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC16.1■□□□□ 0.17
SNRNP40Q96DI7 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC16.1■□□□□ 0.17
SNRNP40Q96DI7 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC16.1■□□□□ 0.17
SNRNP40Q96DI7 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC16.1■□□□□ 0.17
SNRNP40Q96DI7 AP006288.1-201ENST00000446065 395 ntBASIC16.1■□□□□ 0.17
SNRNP40Q96DI7 AC108751.1-201ENST00000490852 363 ntBASIC16.1■□□□□ 0.17
SNRNP40Q96DI7 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC16.1■□□□□ 0.17
SNRNP40Q96DI7 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SNRNP40Q96DI7 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC16.1■□□□□ 0.17
SNRNP40Q96DI7 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC16.1■□□□□ 0.17
SNRNP40Q96DI7 COPE-211ENST00000600932 1144 ntTSL 5 BASIC16.1■□□□□ 0.17
SNRNP40Q96DI7 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC16.1■□□□□ 0.17
SNRNP40Q96DI7 AL596442.2-201ENST00000610240 980 ntBASIC16.1■□□□□ 0.17
SNRNP40Q96DI7 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SNRNP40Q96DI7 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SNRNP40Q96DI7 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
SNRNP40Q96DI7 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
SNRNP40Q96DI7 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
SNRNP40Q96DI7 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC16.1■□□□□ 0.17
SNRNP40Q96DI7 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC16.1■□□□□ 0.17
SNRNP40Q96DI7 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC16.1■□□□□ 0.17
SNRNP40Q96DI7 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC16.1■□□□□ 0.17
SNRNP40Q96DI7 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC16.1■□□□□ 0.17
SNRNP40Q96DI7 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SNRNP40Q96DI7 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
SNRNP40Q96DI7 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC16.1■□□□□ 0.17
SNRNP40Q96DI7 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SNRNP40Q96DI7 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SNRNP40Q96DI7 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SNRNP40Q96DI7 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
SNRNP40Q96DI7 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SNRNP40Q96DI7 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
SNRNP40Q96DI7 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
SNRNP40Q96DI7 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SNRNP40Q96DI7 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SNRNP40Q96DI7 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SNRNP40Q96DI7 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SNRNP40Q96DI7 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
SNRNP40Q96DI7 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
SNRNP40Q96DI7 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
SNRNP40Q96DI7 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
SNRNP40Q96DI7 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SNRNP40Q96DI7 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SNRNP40Q96DI7 AC073621.1-201ENST00000392730 636 ntBASIC16.09■□□□□ 0.17
SNRNP40Q96DI7 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
SNRNP40Q96DI7 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC16.09■□□□□ 0.17
SNRNP40Q96DI7 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC16.09■□□□□ 0.17
SNRNP40Q96DI7 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
SNRNP40Q96DI7 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC16.09■□□□□ 0.17
SNRNP40Q96DI7 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC16.09■□□□□ 0.17
SNRNP40Q96DI7 ETFA-208ENST00000559602 792 ntTSL 3 BASIC16.09■□□□□ 0.17
SNRNP40Q96DI7 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC16.09■□□□□ 0.17
SNRNP40Q96DI7 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC16.09■□□□□ 0.17
SNRNP40Q96DI7 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC16.09■□□□□ 0.17
SNRNP40Q96DI7 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC16.09■□□□□ 0.17
SNRNP40Q96DI7 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SNRNP40Q96DI7 KRT18P28-201ENST00000453838 1332 ntBASIC16.09■□□□□ 0.17
SNRNP40Q96DI7 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SNRNP40Q96DI7 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SNRNP40Q96DI7 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SNRNP40Q96DI7 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC16.09■□□□□ 0.17
SNRNP40Q96DI7 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
SNRNP40Q96DI7 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms