Protein–RNA interactions for Protein: Q96BQ3

TRIM43, Tripartite motif-containing protein 43, humanhuman

Predicted RBP Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM43Q96BQ3 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM43Q96BQ3 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM43Q96BQ3 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM43Q96BQ3 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM43Q96BQ3 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM43Q96BQ3 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM43Q96BQ3 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
TRIM43Q96BQ3 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
TRIM43Q96BQ3 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM43Q96BQ3 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM43Q96BQ3 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
TRIM43Q96BQ3 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC19.4■□□□□ 0.7
TRIM43Q96BQ3 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM43Q96BQ3 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM43Q96BQ3 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC19.4■□□□□ 0.7
TRIM43Q96BQ3 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC19.4■□□□□ 0.7
TRIM43Q96BQ3 ACTG1P14-201ENST00000446382 1122 ntBASIC19.4■□□□□ 0.7
TRIM43Q96BQ3 PON3-205ENST00000451904 1053 ntTSL 3 BASIC19.4■□□□□ 0.7
TRIM43Q96BQ3 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM43Q96BQ3 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC19.4■□□□□ 0.7
TRIM43Q96BQ3 LSM12-202ENST00000585388 942 ntTSL 3 BASIC19.4■□□□□ 0.7
TRIM43Q96BQ3 AC010654.1-201ENST00000615722 808 ntBASIC19.4■□□□□ 0.7
TRIM43Q96BQ3 AL513210.1-201ENST00000629608 234 ntBASIC19.4■□□□□ 0.7
TRIM43Q96BQ3 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC19.4■□□□□ 0.7
TRIM43Q96BQ3 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC19.4■□□□□ 0.7
TRIM43Q96BQ3 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC19.4■□□□□ 0.7
TRIM43Q96BQ3 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC19.4■□□□□ 0.7
TRIM43Q96BQ3 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC19.4■□□□□ 0.7
TRIM43Q96BQ3 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC19.4■□□□□ 0.7
TRIM43Q96BQ3 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM43Q96BQ3 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC19.4■□□□□ 0.7
TRIM43Q96BQ3 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
TRIM43Q96BQ3 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC19.4■□□□□ 0.7
TRIM43Q96BQ3 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.7
TRIM43Q96BQ3 SIRPAP1-201ENST00000448467 1770 ntBASIC19.39■□□□□ 0.7
TRIM43Q96BQ3 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
TRIM43Q96BQ3 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.7
TRIM43Q96BQ3 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM43Q96BQ3 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM43Q96BQ3 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC19.39■□□□□ 0.69
TRIM43Q96BQ3 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
TRIM43Q96BQ3 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM43Q96BQ3 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM43Q96BQ3 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC19.39■□□□□ 0.69
TRIM43Q96BQ3 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC19.39■□□□□ 0.69
TRIM43Q96BQ3 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC19.39■□□□□ 0.69
TRIM43Q96BQ3 AC074386.1-202ENST00000463561 864 ntBASIC19.39■□□□□ 0.69
TRIM43Q96BQ3 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC19.39■□□□□ 0.69
TRIM43Q96BQ3 CD63-210ENST00000550776 870 ntTSL 5 BASIC19.39■□□□□ 0.69
TRIM43Q96BQ3 RIN3-211ENST00000557762 517 ntTSL 3 BASIC19.39■□□□□ 0.69
TRIM43Q96BQ3 MIR4745-201ENST00000577608 62 ntBASIC19.39■□□□□ 0.69
TRIM43Q96BQ3 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC19.39■□□□□ 0.69
TRIM43Q96BQ3 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
TRIM43Q96BQ3 TK1-204ENST00000590430 683 ntTSL 3 BASIC19.39■□□□□ 0.69
TRIM43Q96BQ3 AC004835.2-201ENST00000603762 682 ntBASIC19.39■□□□□ 0.69
TRIM43Q96BQ3 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC19.39■□□□□ 0.69
TRIM43Q96BQ3 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM43Q96BQ3 CITED2-204ENST00000618718 901 ntTSL 2 BASIC19.39■□□□□ 0.69
TRIM43Q96BQ3 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM43Q96BQ3 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC19.39■□□□□ 0.69
TRIM43Q96BQ3 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM43Q96BQ3 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC19.39■□□□□ 0.69
TRIM43Q96BQ3 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC19.39■□□□□ 0.69
TRIM43Q96BQ3 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM43Q96BQ3 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC19.39■□□□□ 0.69
TRIM43Q96BQ3 AC132938.5-201ENST00000624980 1813 ntBASIC19.39■□□□□ 0.69
TRIM43Q96BQ3 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM43Q96BQ3 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC19.39■□□□□ 0.69
TRIM43Q96BQ3 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM43Q96BQ3 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM43Q96BQ3 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC19.38■□□□□ 0.69
TRIM43Q96BQ3 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC19.38■□□□□ 0.69
TRIM43Q96BQ3 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM43Q96BQ3 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM43Q96BQ3 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM43Q96BQ3 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM43Q96BQ3 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM43Q96BQ3 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM43Q96BQ3 AC004461.1-201ENST00000412461 403 ntBASIC19.38■□□□□ 0.69
TRIM43Q96BQ3 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC19.38■□□□□ 0.69
TRIM43Q96BQ3 RHOQP3-201ENST00000437982 621 ntBASIC19.38■□□□□ 0.69
TRIM43Q96BQ3 TAF8-206ENST00000472818 719 ntTSL 2 BASIC19.38■□□□□ 0.69
TRIM43Q96BQ3 AC109322.1-201ENST00000524499 1264 ntBASIC19.38■□□□□ 0.69
TRIM43Q96BQ3 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM43Q96BQ3 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC19.38■□□□□ 0.69
TRIM43Q96BQ3 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
TRIM43Q96BQ3 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC19.38■□□□□ 0.69
TRIM43Q96BQ3 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
TRIM43Q96BQ3 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM43Q96BQ3 AC025580.3-201ENST00000617932 1424 ntBASIC19.38■□□□□ 0.69
TRIM43Q96BQ3 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM43Q96BQ3 AC091812.2-201ENST00000619081 385 ntBASIC19.38■□□□□ 0.69
TRIM43Q96BQ3 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
TRIM43Q96BQ3 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM43Q96BQ3 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC19.37■□□□□ 0.69
TRIM43Q96BQ3 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM43Q96BQ3 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM43Q96BQ3 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM43Q96BQ3 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC19.37■□□□□ 0.69
TRIM43Q96BQ3 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 109.8 ms