Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC21.22■□□□□ 0.99
SMC1BQ8NDV3 AC027307.3-201ENST00000594262 1100 ntBASIC21.22■□□□□ 0.99
SMC1BQ8NDV3 AL136317.3-201ENST00000618497 906 ntBASIC21.22■□□□□ 0.99
SMC1BQ8NDV3 AC007064.4-201ENST00000637740 555 ntBASIC21.22■□□□□ 0.99
SMC1BQ8NDV3 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
SMC1BQ8NDV3 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC21.22■□□□□ 0.99
SMC1BQ8NDV3 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SMC1BQ8NDV3 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
SMC1BQ8NDV3 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SMC1BQ8NDV3 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC21.21■□□□□ 0.99
SMC1BQ8NDV3 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC21.21■□□□□ 0.99
SMC1BQ8NDV3 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SMC1BQ8NDV3 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC21.21■□□□□ 0.99
SMC1BQ8NDV3 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC21.21■□□□□ 0.99
SMC1BQ8NDV3 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC21.21■□□□□ 0.99
SMC1BQ8NDV3 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
SMC1BQ8NDV3 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC21.21■□□□□ 0.99
SMC1BQ8NDV3 POLD4-207ENST00000531239 584 ntTSL 2 BASIC21.21■□□□□ 0.99
SMC1BQ8NDV3 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SMC1BQ8NDV3 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SMC1BQ8NDV3 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SMC1BQ8NDV3 COQ6-210ENST00000554920 649 ntTSL 3 BASIC21.21■□□□□ 0.99
SMC1BQ8NDV3 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC21.21■□□□□ 0.99
SMC1BQ8NDV3 AD001527.2-201ENST00000622994 785 ntBASIC21.21■□□□□ 0.99
SMC1BQ8NDV3 AC009093.7-201ENST00000623853 1223 ntBASIC21.21■□□□□ 0.99
SMC1BQ8NDV3 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC21.21■□□□□ 0.99
SMC1BQ8NDV3 REM2-202ENST00000536884 1331 ntTSL 2 BASIC21.21■□□□□ 0.99
SMC1BQ8NDV3 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SMC1BQ8NDV3 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SMC1BQ8NDV3 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC21.21■□□□□ 0.99
SMC1BQ8NDV3 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
SMC1BQ8NDV3 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
SMC1BQ8NDV3 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SMC1BQ8NDV3 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC21.2■□□□□ 0.98
SMC1BQ8NDV3 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC21.2■□□□□ 0.98
SMC1BQ8NDV3 UGT1A2P-201ENST00000454886 866 ntBASIC21.2■□□□□ 0.98
SMC1BQ8NDV3 VPS29-207ENST00000549970 818 ntTSL 3 BASIC21.2■□□□□ 0.98
SMC1BQ8NDV3 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC21.2■□□□□ 0.98
SMC1BQ8NDV3 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC21.2■□□□□ 0.98
SMC1BQ8NDV3 AC023141.13-201ENST00000604991 943 ntBASIC21.2■□□□□ 0.98
SMC1BQ8NDV3 AL606495.2-201ENST00000605867 535 ntBASIC21.2■□□□□ 0.98
SMC1BQ8NDV3 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
SMC1BQ8NDV3 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC21.2■□□□□ 0.98
SMC1BQ8NDV3 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SMC1BQ8NDV3 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC21.2■□□□□ 0.98
SMC1BQ8NDV3 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
SMC1BQ8NDV3 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
SMC1BQ8NDV3 UBQLN4P1-201ENST00000461599 1801 ntBASIC21.2■□□□□ 0.98
SMC1BQ8NDV3 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC21.2■□□□□ 0.98
SMC1BQ8NDV3 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SMC1BQ8NDV3 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SMC1BQ8NDV3 AL391422.3-201ENST00000603791 2761 ntBASIC21.19■□□□□ 0.98
SMC1BQ8NDV3 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC21.19■□□□□ 0.98
SMC1BQ8NDV3 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC21.19■□□□□ 0.98
SMC1BQ8NDV3 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SMC1BQ8NDV3 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC21.19■□□□□ 0.98
SMC1BQ8NDV3 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC21.19■□□□□ 0.98
SMC1BQ8NDV3 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SMC1BQ8NDV3 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
SMC1BQ8NDV3 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SMC1BQ8NDV3 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC21.19■□□□□ 0.98
SMC1BQ8NDV3 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
SMC1BQ8NDV3 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC21.19■□□□□ 0.98
SMC1BQ8NDV3 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC21.19■□□□□ 0.98
SMC1BQ8NDV3 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC21.19■□□□□ 0.98
SMC1BQ8NDV3 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC21.19■□□□□ 0.98
SMC1BQ8NDV3 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SMC1BQ8NDV3 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC21.19■□□□□ 0.98
SMC1BQ8NDV3 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SMC1BQ8NDV3 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SMC1BQ8NDV3 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SMC1BQ8NDV3 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SMC1BQ8NDV3 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SMC1BQ8NDV3 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
SMC1BQ8NDV3 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
SMC1BQ8NDV3 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SMC1BQ8NDV3 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
SMC1BQ8NDV3 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC21.18■□□□□ 0.98
SMC1BQ8NDV3 AL024508.2-201ENST00000607749 1894 ntBASIC21.18■□□□□ 0.98
SMC1BQ8NDV3 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SMC1BQ8NDV3 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SMC1BQ8NDV3 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC21.18■□□□□ 0.98
SMC1BQ8NDV3 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SMC1BQ8NDV3 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SMC1BQ8NDV3 VMA21-202ENST00000370361 693 ntTSL 5 BASIC21.18■□□□□ 0.98
SMC1BQ8NDV3 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC21.18■□□□□ 0.98
SMC1BQ8NDV3 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC21.18■□□□□ 0.98
SMC1BQ8NDV3 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC21.18■□□□□ 0.98
SMC1BQ8NDV3 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC21.18■□□□□ 0.98
SMC1BQ8NDV3 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC21.18■□□□□ 0.98
SMC1BQ8NDV3 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC21.18■□□□□ 0.98
SMC1BQ8NDV3 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC21.18■□□□□ 0.98
SMC1BQ8NDV3 HFE2-206ENST00000634927 506 ntTSL 4 BASIC21.18■□□□□ 0.98
SMC1BQ8NDV3 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC21.18■□□□□ 0.98
SMC1BQ8NDV3 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC21.18■□□□□ 0.98
SMC1BQ8NDV3 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SMC1BQ8NDV3 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC21.18■□□□□ 0.98
SMC1BQ8NDV3 AL157384.1-201ENST00000445995 2473 ntBASIC21.18■□□□□ 0.98
SMC1BQ8NDV3 UROS-202ENST00000368778 1556 ntTSL 2 BASIC21.18■□□□□ 0.98
SMC1BQ8NDV3 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC21.18■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms