Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
ZNF540Q8NDQ6 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
ZNF540Q8NDQ6 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
ZNF540Q8NDQ6 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
ZNF540Q8NDQ6 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
ZNF540Q8NDQ6 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
ZNF540Q8NDQ6 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
ZNF540Q8NDQ6 FAM210CP-201ENST00000445714 574 ntBASIC16.69■□□□□ 0.26
ZNF540Q8NDQ6 AP002982.1-201ENST00000492365 877 ntBASIC16.69■□□□□ 0.26
ZNF540Q8NDQ6 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
ZNF540Q8NDQ6 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC16.69■□□□□ 0.26
ZNF540Q8NDQ6 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC16.69■□□□□ 0.26
ZNF540Q8NDQ6 CD177P1-201ENST00000606252 935 ntBASIC16.69■□□□□ 0.26
ZNF540Q8NDQ6 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC16.69■□□□□ 0.26
ZNF540Q8NDQ6 Six3os1_6.1-201ENST00000620790 196 ntBASIC16.69■□□□□ 0.26
ZNF540Q8NDQ6 HLA-A-209ENST00000638375 975 ntBASIC16.69■□□□□ 0.26
ZNF540Q8NDQ6 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
ZNF540Q8NDQ6 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
ZNF540Q8NDQ6 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
ZNF540Q8NDQ6 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
ZNF540Q8NDQ6 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
ZNF540Q8NDQ6 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
ZNF540Q8NDQ6 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC16.69■□□□□ 0.26
ZNF540Q8NDQ6 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
ZNF540Q8NDQ6 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
ZNF540Q8NDQ6 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC16.69■□□□□ 0.26
ZNF540Q8NDQ6 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC16.69■□□□□ 0.26
ZNF540Q8NDQ6 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
ZNF540Q8NDQ6 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
ZNF540Q8NDQ6 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
ZNF540Q8NDQ6 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
ZNF540Q8NDQ6 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
ZNF540Q8NDQ6 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
ZNF540Q8NDQ6 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
ZNF540Q8NDQ6 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC16.68■□□□□ 0.26
ZNF540Q8NDQ6 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
ZNF540Q8NDQ6 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
ZNF540Q8NDQ6 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
ZNF540Q8NDQ6 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC16.68■□□□□ 0.26
ZNF540Q8NDQ6 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
ZNF540Q8NDQ6 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC16.68■□□□□ 0.26
ZNF540Q8NDQ6 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC16.68■□□□□ 0.26
ZNF540Q8NDQ6 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC16.68■□□□□ 0.26
ZNF540Q8NDQ6 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC16.68■□□□□ 0.26
ZNF540Q8NDQ6 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
ZNF540Q8NDQ6 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC16.68■□□□□ 0.26
ZNF540Q8NDQ6 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
ZNF540Q8NDQ6 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC16.68■□□□□ 0.26
ZNF540Q8NDQ6 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
ZNF540Q8NDQ6 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC16.68■□□□□ 0.26
ZNF540Q8NDQ6 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
ZNF540Q8NDQ6 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC16.68■□□□□ 0.26
ZNF540Q8NDQ6 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC16.68■□□□□ 0.26
ZNF540Q8NDQ6 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC16.68■□□□□ 0.26
ZNF540Q8NDQ6 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC16.68■□□□□ 0.26
ZNF540Q8NDQ6 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
ZNF540Q8NDQ6 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
ZNF540Q8NDQ6 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
ZNF540Q8NDQ6 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
ZNF540Q8NDQ6 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC16.68■□□□□ 0.26
ZNF540Q8NDQ6 KRT8P41-201ENST00000533985 1514 ntBASIC16.68■□□□□ 0.26
ZNF540Q8NDQ6 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
ZNF540Q8NDQ6 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
ZNF540Q8NDQ6 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
ZNF540Q8NDQ6 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
ZNF540Q8NDQ6 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
ZNF540Q8NDQ6 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
ZNF540Q8NDQ6 AL118508.1-201ENST00000613502 2345 ntBASIC16.68■□□□□ 0.26
ZNF540Q8NDQ6 LINC00602-201ENST00000629776 2065 ntBASIC16.68■□□□□ 0.26
ZNF540Q8NDQ6 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
ZNF540Q8NDQ6 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
ZNF540Q8NDQ6 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC16.68■□□□□ 0.26
ZNF540Q8NDQ6 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
ZNF540Q8NDQ6 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
ZNF540Q8NDQ6 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
ZNF540Q8NDQ6 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
ZNF540Q8NDQ6 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
ZNF540Q8NDQ6 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
ZNF540Q8NDQ6 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
ZNF540Q8NDQ6 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
ZNF540Q8NDQ6 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
ZNF540Q8NDQ6 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
ZNF540Q8NDQ6 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
ZNF540Q8NDQ6 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
ZNF540Q8NDQ6 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
ZNF540Q8NDQ6 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC16.67■□□□□ 0.26
ZNF540Q8NDQ6 AC018695.7-201ENST00000624587 2492 ntBASIC16.67■□□□□ 0.26
ZNF540Q8NDQ6 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
ZNF540Q8NDQ6 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
ZNF540Q8NDQ6 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
ZNF540Q8NDQ6 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
ZNF540Q8NDQ6 AP003071.4-201ENST00000562276 1284 ntBASIC16.67■□□□□ 0.26
ZNF540Q8NDQ6 AL353708.3-201ENST00000610272 989 ntBASIC16.67■□□□□ 0.26
ZNF540Q8NDQ6 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC16.67■□□□□ 0.26
ZNF540Q8NDQ6 DECR2-212ENST00000627716 352 ntTSL 2 BASIC16.67■□□□□ 0.26
ZNF540Q8NDQ6 KRT8P3-201ENST00000519669 1449 ntBASIC16.67■□□□□ 0.26
ZNF540Q8NDQ6 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
ZNF540Q8NDQ6 GMCL1P1-201ENST00000463439 1581 ntBASIC16.67■□□□□ 0.26
ZNF540Q8NDQ6 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
ZNF540Q8NDQ6 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms