Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
USHBP1Q8N6Y0 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC23.58■■□□□ 1.37
USHBP1Q8N6Y0 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
USHBP1Q8N6Y0 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC23.58■■□□□ 1.37
USHBP1Q8N6Y0 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC23.58■■□□□ 1.37
USHBP1Q8N6Y0 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
USHBP1Q8N6Y0 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
USHBP1Q8N6Y0 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC23.58■■□□□ 1.37
USHBP1Q8N6Y0 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC23.58■■□□□ 1.37
USHBP1Q8N6Y0 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC23.58■■□□□ 1.37
USHBP1Q8N6Y0 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
USHBP1Q8N6Y0 AC073621.1-201ENST00000392730 636 ntBASIC23.58■■□□□ 1.37
USHBP1Q8N6Y0 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
USHBP1Q8N6Y0 KRT18P27-201ENST00000427733 1299 ntBASIC23.58■■□□□ 1.37
USHBP1Q8N6Y0 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC23.58■■□□□ 1.37
USHBP1Q8N6Y0 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC23.58■■□□□ 1.37
USHBP1Q8N6Y0 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC23.58■■□□□ 1.37
USHBP1Q8N6Y0 AC073592.4-201ENST00000623827 446 ntBASIC23.58■■□□□ 1.37
USHBP1Q8N6Y0 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
USHBP1Q8N6Y0 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC23.58■■□□□ 1.37
USHBP1Q8N6Y0 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC23.58■■□□□ 1.37
USHBP1Q8N6Y0 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC23.58■■□□□ 1.37
USHBP1Q8N6Y0 ADM-208ENST00000534464 1640 ntTSL 2 BASIC23.58■■□□□ 1.36
USHBP1Q8N6Y0 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
USHBP1Q8N6Y0 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC23.57■■□□□ 1.36
USHBP1Q8N6Y0 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
USHBP1Q8N6Y0 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
USHBP1Q8N6Y0 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
USHBP1Q8N6Y0 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
USHBP1Q8N6Y0 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
USHBP1Q8N6Y0 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC23.57■■□□□ 1.36
USHBP1Q8N6Y0 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC23.57■■□□□ 1.36
USHBP1Q8N6Y0 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
USHBP1Q8N6Y0 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC23.57■■□□□ 1.36
USHBP1Q8N6Y0 AC112482.1-201ENST00000492080 688 ntBASIC23.57■■□□□ 1.36
USHBP1Q8N6Y0 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC23.57■■□□□ 1.36
USHBP1Q8N6Y0 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC23.57■■□□□ 1.36
USHBP1Q8N6Y0 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC23.57■■□□□ 1.36
USHBP1Q8N6Y0 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC23.57■■□□□ 1.36
USHBP1Q8N6Y0 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC23.57■■□□□ 1.36
USHBP1Q8N6Y0 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC23.57■■□□□ 1.36
USHBP1Q8N6Y0 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC23.57■■□□□ 1.36
USHBP1Q8N6Y0 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC23.57■■□□□ 1.36
USHBP1Q8N6Y0 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC23.57■■□□□ 1.36
USHBP1Q8N6Y0 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
USHBP1Q8N6Y0 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC23.56■■□□□ 1.36
USHBP1Q8N6Y0 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC23.56■■□□□ 1.36
USHBP1Q8N6Y0 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
USHBP1Q8N6Y0 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
USHBP1Q8N6Y0 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC23.56■■□□□ 1.36
USHBP1Q8N6Y0 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
USHBP1Q8N6Y0 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
USHBP1Q8N6Y0 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC23.56■■□□□ 1.36
USHBP1Q8N6Y0 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
USHBP1Q8N6Y0 SPDYE21P-201ENST00000413323 827 ntBASIC23.56■■□□□ 1.36
USHBP1Q8N6Y0 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC23.56■■□□□ 1.36
USHBP1Q8N6Y0 RPS8P6-201ENST00000426177 609 ntBASIC23.56■■□□□ 1.36
USHBP1Q8N6Y0 AC122714.2-201ENST00000502787 707 ntBASIC23.56■■□□□ 1.36
USHBP1Q8N6Y0 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC23.56■■□□□ 1.36
USHBP1Q8N6Y0 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC23.56■■□□□ 1.36
USHBP1Q8N6Y0 AC073592.5-201ENST00000624854 528 ntBASIC23.56■■□□□ 1.36
USHBP1Q8N6Y0 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
USHBP1Q8N6Y0 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
USHBP1Q8N6Y0 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
USHBP1Q8N6Y0 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC23.56■■□□□ 1.36
USHBP1Q8N6Y0 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
USHBP1Q8N6Y0 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
USHBP1Q8N6Y0 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
USHBP1Q8N6Y0 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC23.56■■□□□ 1.36
USHBP1Q8N6Y0 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC23.56■■□□□ 1.36
USHBP1Q8N6Y0 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
USHBP1Q8N6Y0 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC23.55■■□□□ 1.36
USHBP1Q8N6Y0 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
USHBP1Q8N6Y0 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC23.55■■□□□ 1.36
USHBP1Q8N6Y0 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
USHBP1Q8N6Y0 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
USHBP1Q8N6Y0 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC23.55■■□□□ 1.36
USHBP1Q8N6Y0 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC23.55■■□□□ 1.36
USHBP1Q8N6Y0 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC23.55■■□□□ 1.36
USHBP1Q8N6Y0 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
USHBP1Q8N6Y0 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC23.55■■□□□ 1.36
USHBP1Q8N6Y0 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC23.55■■□□□ 1.36
USHBP1Q8N6Y0 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
USHBP1Q8N6Y0 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
USHBP1Q8N6Y0 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC23.55■■□□□ 1.36
USHBP1Q8N6Y0 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
USHBP1Q8N6Y0 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
USHBP1Q8N6Y0 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC23.55■■□□□ 1.36
USHBP1Q8N6Y0 AC148477.5-201ENST00000625164 1645 ntBASIC23.55■■□□□ 1.36
USHBP1Q8N6Y0 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC23.55■■□□□ 1.36
USHBP1Q8N6Y0 STX6-204ENST00000542060 4809 ntTSL 2 BASIC23.54■■□□□ 1.36
USHBP1Q8N6Y0 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
USHBP1Q8N6Y0 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC23.54■■□□□ 1.36
USHBP1Q8N6Y0 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC23.54■■□□□ 1.36
USHBP1Q8N6Y0 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
USHBP1Q8N6Y0 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC23.54■■□□□ 1.36
USHBP1Q8N6Y0 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
USHBP1Q8N6Y0 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC23.54■■□□□ 1.36
USHBP1Q8N6Y0 CRCP-205ENST00000431089 942 ntTSL 2 BASIC23.54■■□□□ 1.36
USHBP1Q8N6Y0 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC23.54■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms