Protein–RNA interactions for Protein: Q68DV7

RNF43, E3 ubiquitin-protein ligase RNF43, humanhuman

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF43Q68DV7 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RNF43Q68DV7 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RNF43Q68DV7 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC18.85■□□□□ 0.61
RNF43Q68DV7 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RNF43Q68DV7 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC18.85■□□□□ 0.61
RNF43Q68DV7 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC18.85■□□□□ 0.61
RNF43Q68DV7 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC18.85■□□□□ 0.61
RNF43Q68DV7 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC18.85■□□□□ 0.61
RNF43Q68DV7 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC18.85■□□□□ 0.61
RNF43Q68DV7 TSSC2-201ENST00000450217 709 ntBASIC18.85■□□□□ 0.61
RNF43Q68DV7 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC18.85■□□□□ 0.61
RNF43Q68DV7 AC004263.2-201ENST00000617183 678 ntBASIC18.85■□□□□ 0.61
RNF43Q68DV7 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC18.85■□□□□ 0.61
RNF43Q68DV7 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
RNF43Q68DV7 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
RNF43Q68DV7 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
RNF43Q68DV7 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RNF43Q68DV7 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RNF43Q68DV7 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC18.85■□□□□ 0.61
RNF43Q68DV7 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC18.85■□□□□ 0.61
RNF43Q68DV7 UROS-202ENST00000368778 1556 ntTSL 2 BASIC18.85■□□□□ 0.61
RNF43Q68DV7 MYLKP1-201ENST00000509077 1580 ntBASIC18.85■□□□□ 0.61
RNF43Q68DV7 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RNF43Q68DV7 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
RNF43Q68DV7 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC18.84■□□□□ 0.61
RNF43Q68DV7 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RNF43Q68DV7 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RNF43Q68DV7 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
RNF43Q68DV7 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
RNF43Q68DV7 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
RNF43Q68DV7 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
RNF43Q68DV7 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RNF43Q68DV7 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC18.84■□□□□ 0.61
RNF43Q68DV7 PPIH-202ENST00000372549 327 ntTSL 3 BASIC18.84■□□□□ 0.61
RNF43Q68DV7 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
RNF43Q68DV7 IGHGP-201ENST00000390555 1178 ntBASIC18.84■□□□□ 0.61
RNF43Q68DV7 AL022342.1-201ENST00000400363 863 ntBASIC18.84■□□□□ 0.61
RNF43Q68DV7 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC18.84■□□□□ 0.61
RNF43Q68DV7 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC18.84■□□□□ 0.61
RNF43Q68DV7 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC18.84■□□□□ 0.61
RNF43Q68DV7 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC18.84■□□□□ 0.61
RNF43Q68DV7 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC18.84■□□□□ 0.61
RNF43Q68DV7 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC18.84■□□□□ 0.61
RNF43Q68DV7 AC024563.2-201ENST00000603282 481 ntBASIC18.84■□□□□ 0.61
RNF43Q68DV7 LINC00896-202ENST00000609602 2128 ntBASIC18.84■□□□□ 0.61
RNF43Q68DV7 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC18.84■□□□□ 0.61
RNF43Q68DV7 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC18.84■□□□□ 0.61
RNF43Q68DV7 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
RNF43Q68DV7 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RNF43Q68DV7 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RNF43Q68DV7 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RNF43Q68DV7 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
RNF43Q68DV7 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
RNF43Q68DV7 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC18.84■□□□□ 0.61
RNF43Q68DV7 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
RNF43Q68DV7 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC18.83■□□□□ 0.61
RNF43Q68DV7 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
RNF43Q68DV7 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
RNF43Q68DV7 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC18.83■□□□□ 0.61
RNF43Q68DV7 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
RNF43Q68DV7 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
RNF43Q68DV7 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
RNF43Q68DV7 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC18.83■□□□□ 0.61
RNF43Q68DV7 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
RNF43Q68DV7 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC18.83■□□□□ 0.61
RNF43Q68DV7 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC18.83■□□□□ 0.61
RNF43Q68DV7 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
RNF43Q68DV7 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
RNF43Q68DV7 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC18.83■□□□□ 0.6
RNF43Q68DV7 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC18.83■□□□□ 0.6
RNF43Q68DV7 TSPY22P-201ENST00000427496 604 ntBASIC18.83■□□□□ 0.6
RNF43Q68DV7 BX276092.5-203ENST00000456199 560 ntBASIC18.83■□□□□ 0.6
RNF43Q68DV7 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
RNF43Q68DV7 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
RNF43Q68DV7 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC18.83■□□□□ 0.6
RNF43Q68DV7 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC18.83■□□□□ 0.6
RNF43Q68DV7 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC18.83■□□□□ 0.6
RNF43Q68DV7 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC18.83■□□□□ 0.6
RNF43Q68DV7 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
RNF43Q68DV7 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
RNF43Q68DV7 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
RNF43Q68DV7 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
RNF43Q68DV7 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
RNF43Q68DV7 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
RNF43Q68DV7 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
RNF43Q68DV7 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC18.83■□□□□ 0.6
RNF43Q68DV7 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
RNF43Q68DV7 SDHAP2-201ENST00000455183 2001 ntBASIC18.83■□□□□ 0.6
RNF43Q68DV7 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RNF43Q68DV7 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
RNF43Q68DV7 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RNF43Q68DV7 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RNF43Q68DV7 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
RNF43Q68DV7 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC18.82■□□□□ 0.6
RNF43Q68DV7 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC18.82■□□□□ 0.6
RNF43Q68DV7 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC18.82■□□□□ 0.6
RNF43Q68DV7 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RNF43Q68DV7 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
RNF43Q68DV7 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
RNF43Q68DV7 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms